Query= MSMg01no186_o02.b1 MSMg01no186_o02.b1 CHROMAT_FILE:
MSMg01no186_o02.b1 PHD_FILE: MSMg01no186_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:01 2005
(317 letters)
>mm_chr1_55975778_55976494
Length = 717
Score = 600 bits (310), Expect = e-176
Identities = 313/314 (99%)
Strand = Plus / Minus
Query: 4 ggaattccttgatttccaatgattgcacctccattcagtagaaaagacacaggtggttaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 343 ggaattccttgatttccaatgattgcacctccattcagtagaaaagacacaggcggttaa 284
Query: 64 aacaaccattcaaccttttgagtacatctcactgctttggtaagtataaacagattacat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aacaaccattcaaccttttgagtacatctcactgctttggtaagtataaacagattacat 224
Query: 124 tttaaaacaacaggtgctatctgggcatggtggctaatgcctgtaattccagaacttggg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tttaaaacaacaggtgctatctgggcatggtggctaatgcctgtaattccagaacttggg 164
Query: 184 aagctgagcaagaaggctctgtcctgagttggaagccagtttgagctacatgggagttgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 aagctgagcaagaaggctctgtcctgagttggaagccagtttgagctacatgggagttgt 104
Query: 244 gggccaggctgggctatatatgagagcttgcctcaaaatcaaaagccaaacataattgtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 gggccaggctgggctatatatgagagcttgcctcaaaatcaaaagccaaacataattgtg 44
Query: 304 ctgagcaacaacaa 317
||||||||||||||
Sbjct: 43 ctgagcaacaacaa 30
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no186_o02.g1 MSMg01no186_o02.g1 CHROMAT_FILE:
MSMg01no186_o02.g1 PHD_FILE: MSMg01no186_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:01 2005
(522 letters)
>mm_chr1_55848567_55849491
Length = 925
Score = 899 bits (465), Expect = 0.0
Identities = 488/497 (98%), Gaps = 3/497 (0%)
Strand = Plus / Plus
Query: 7 ctttttatgtcagtgatgaggatttgaaaccagatcctcatccttgctcaagaagtatgc 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 207 ctttttatgtcagtgatgaggatttgaaaccagatcctcatccttgctcaagaagtattc 266
Query: 67 atacgtgctgagccatctcccaggccccagacagattttatagctgatttacacattaat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atacgtgctgagccatctcccaggccccagacagattttatagctgatttacacattaat 326
Query: 127 agaggattacctttatcaaggcctaattgaaggtataggaagcatagcctttaatccagg 186
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 327 agaggattacctttatcaaggcctaattgaaggtataggaagcatagcgtttaatccagg 386
Query: 187 gcttactcttttccatatgaccactctctcctcaatgtgcttagaggggattaaacattg 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcttactcttttccatatgaccactctctcctcaatgtgcttagaggggattaaacattg 446
Query: 247 aag---caagaagagaatcacagaaagaaaatactgcctttggtatggacctgggaaagg 303
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 447 aagaagcaagaagagaatcacagaaagaaaatactgtctttggtatggacctgggaaagg 506
Query: 304 gaaggctcatgttcatagacttgactttacagaggctacattctgagctatcctgatacc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaaggctcatgttcatagacttgactttacagaggctacattctgagctatcctgatacc 566
Query: 364 cagacatcaccactgctgacagtgtgacctgagactccctgaagactcccaagcaactta 423
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cagacatcgccactgctgacagtgtgacctgagactccctgaagactcccaagcaactta 626
Query: 424 gacatgttgcttccaccaacaaataggaaattctctctctctctctctctctctctctct 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 627 gacatgttgcttccaccaacaaataggaaattctctctctctctctctctctctctgtct 686
Query: 484 ctctctctctctctctc 500
|||||||||||||||||
Sbjct: 687 ctctctctctctctctc 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 925
Length adjustment: 10
Effective length of query: 512
Effective length of database: 915
Effective search space: 468480
Effective search space used: 468480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
