BAC Information

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BAC

Clone NameMSMg01-186O21
Chromosome1 (Build37)
Map Location 96,698,974 - 96,699,260
singlet/doubletsinglet
Overlap genenone
Upstream geneIng5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186O21.T7 (MSMg01no186_o21.b1)MSMg01-186O21.TJ (MSMg01no186_o21.g1)
ACCAG378456AG378457
length789762
length of high quality
(start - end)		281 (47 - 327)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no186_o21.b1 PHD_FILE: MSMg01no186_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:05 2005CHROMAT_FILE: MSMg01no186_o21.g1 PHD_FILE: MSMg01no186_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCGTGGATGACTGAGAAAGGAAAGGATGTGGCTTAACAGTGAT
TTGTTTGTGTTCTAGTTGACTTGACCTCAGTTGTGCTGGATAATTTTATA
TCAACTTGACACAACATAAAGCCATCTGAGAGGAGGGAACCTCAATTAAG
AAAATGTCTCCATGAGACTGGGCTATAGGTTAACCTGTAGGGCATTTTCT
CAACTAGATGTTGACAGAGGAAGGCCCAGCACATTGTGGGTCGTGACATC
CCTGAGCTGGTGGTCCGGGGTTCTGTCTTTAAGCAGGCTGAGCAAGCCAG
TATGCTGCACTTTTTAGTGTTTCCCAAACAAACCCCTGNATTTAGGTTCC
AGTCCTGTTCGAGTTTCCCCCCCCCAAAAAAAAAAAAAAAATNGGGTGGG
GGGGGGGTTTATTTTAATTAAACTCTCTTCTTCCTCAATAAATATATTTG
TCATCTTCTCACTTTTTTTTTTTTTATTTATTTTTTTTTTTTTCATTTAT
TTTATCACTTTAATCTATCTCTTCTTTTCTGTATTACCTTTATTAATATT
ATACTCCTTCCCTTTCTATTCTTATTCTCTTATTTTGTGTATCTCCATAA
ACTATGTTCAATCTTAACCCTTCCCCATCCTACTCCTCCTTCATATTTTC
ATTTTCAATCTCTCACTTCCCCACCCTCCTTATTCTATTCTTTTTCCTCC
TCCAAACACACCCATCTATTTTATATTATATTCGATATN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGGAAGAGAACCAAATGCAGA
ATACAGATAAAAAGATTTTATCTTATTAATATAAATATTGATGTAAAATG
TCTCTTTTGGGCCACAGTGCTGACAGTTTGCTTTATCTGCTTTAAATTAT
CTGGCATTCATTTTTGGTAACTGTATGTGTTTGCTCCATTGCCTACAGAG
AAGCATCCCTGGTTTGGGAAAATCATCTTTATTTGCAAACCTACTTAGTC
TACTTTTTTACTCTTACGTGGGTCCCTCAAAAGTCCCACTGAGCAAACAT
TTAAACTGTATAATGTTTTGTCCCACTCCCCTCTGTCACCCACAGCCGGG
CGTGGTGGCACACACCTCCCCCCCCAAAAAAAAGAAGGCAGAGGCAGGCA
GATTTCTGAGGTCGAGACCGGTCTACAAAGTGAGTTTCAGGACAGCCAGG
GCTACTCTGAGAATCCCTGTCTCGAAAAACCTTATAACCTTCAAAACAAC
TTACCCTCACTAATCTTTATCATTCGCTATCTAACATAACTCACCTTACA
CAACTTTTATTCATACCACATCTAACCTCAAAATATCCCTCTGTTCCACA
CCTCAGCTATTCCTAAAGTTTTTCCTATGTTACCTCCGGTTTCCCTACGT
TTTTCTTAAATTTTTTTATTTACCATACCCCTTCTTTTTTTTTATATTAC
TCTGGCTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_o21.g1 MSMg01no186_o21.g1 CHROMAT_FILE:
MSMg01no186_o21.g1 PHD_FILE: MSMg01no186_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:05 2005
         (287 letters)



>mm_chr1_96698774_96699460
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaggaagagaaccaaatgcagaatacagataaaaagattttatcttattaatataaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaaggaagagaaccaaatgcagaatacagataaaaagattttatcttattaatataaat 260

                                                                       
Query: 61  attgatgtaaaatgtctcttttgggccacagtgctgacagtttgctttatctgctttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgatgtaaaatgtctcttttgggccacagtgctgacagtttgctttatctgctttaaa 320

                                                                       
Query: 121 ttatctggcattcatttttggtaactgtatgtgtttgctccattgcctacagagaagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatctggcattcatttttggtaactgtatgtgtttgctccattgcctacagagaagcat 380

                                                                       
Query: 181 ccctggtttgggaaaatcatctttatttgcaaacctacttagtctacttttttactctta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ccctggtttgggaaaatcatctttatttgcaaacctacttagtctacttttttactgtta 440

                                                          
Query: 241 cgtgggtccctcaaaagtcccactgagcaaacatttaaactgtataa 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtgggtccctcaaaagtcccactgagcaaacatttaaactgtataa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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