BAC Information

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BAC

Clone NameMSMg01-186P13
Chromosome1 (Build37)
Map Location 78,455,516 - 78,455,801
singlet/doubletsinglet
Overlap geneFarsb
Upstream geneEpha4, LOC100039330, Pax3, LOC100039210, Sgpp2, LOC100039382
Downstream geneMogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332, Scg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186P13.T7 (MSMg01no186_p13.b1)MSMg01-186P13.TJ (MSMg01no186_p13.g1)
ACCAG378485AG378486
length835755
length of high quality
(start - end)
74 (46 - 119)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no186_p13.b1 PHD_FILE: MSMg01no186_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:08 2005CHROMAT_FILE: MSMg01no186_p13.g1 PHD_FILE: MSMg01no186_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGACAGTCAGGGCTATACAGAGAAACCCTGTCTCAAAAACCAA
AACAAAACAACAAAAAAGATTAGAACGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGGGAGGGAGGTTNTTTTTTTCTTNTTTGTTTTGTTCTTTTCTGT
TGTTGTTGTTGCTCTTTTGGCGCCCGTGGCCTTCTTTGCCGCAGTGTTTT
TTTCTTTTTCTCATGCTTTCTTCTTTGTTTTTCTTTTTCTCCTGCTTGCC
TCTCTGTTTAATTTTAATTTTTTTTTTTTCCCCCCCCCCCCCCCCCTGAT
AATAGATTTTTTTTTTAATAGTAATGGCTCCCCCCCCTTTTTTAAAAAAA
AAATATAATTTTTTCGCTTTGCTTGTTTTCTTCTTTTTTCTTTTTTTATC
TCTTGCCCTTTTCCTTTCCTTTTTTTTTTTTTCTTCTCTCTTTCTTTTTA
TCTTTCCTTAGCTCTTTTCCTTCCCTCTATTCTCTACCTATTCTTTTTCC
TTTTTCTATTCTTCCCCCTATTCTTTACTTTTCTTTTCCTTTCCGCTTTT
TTTCTTTCTTTTCTTTTTTTTTACTTTCTTTATCATTTTCCCTTATTTTT
GCTCTGCGTTTTCCGTCCTTTTGTTTTTTCTTCTTTTTTTTTCTCTCCTT
TCCTCTTTCACTCTTTCTCTCCCACATACTTTTGTCTTTCTTCTTCTTTC
TATGTTCTTTCCGTTCTTTATTGTTTCTTTCCTCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTAGGTGCACAGTTCTGCCCCA
GATCAGTGCAGACTTAACCTGGGATTGCACTGGTAACCAGAAAACCCTGG
GGAAACTGAGAGAGGCTCTCTTACTGGTCCCACTAGAGATACCTTTATTG
AAGAGCTAAAGAGCAGTCACTTAAGTAGAGCCTTGGGTTTGCTTTGTGTG
GTGCTGGCACAGTGATTTTAGCTAAAGGCAGGTAAAATTATAATGCTCAG
AAAACAGGGAGGAATTAGGAGCTTGGACAGGAACGGTAAGTGGGGACCTC
GTACAGAGAGGATCTGTTTGTGCCCCCCCCCTCCATCTCTCCAGGAGACA
TTAAGTAGCTCCCTATCGCCCCTACAGCTCCTCATAAAGAGCTAGTCATA
GTTATTGCATCTTCTGTGAGTCCAAAGTAGGTGAACTACCAGTGATGAAT
TGTTATTTGTTAAAACTCAGCAGATCCAATCTTGTGTTATTATTAATCTA
CTGAATTCTATAGAGCACCTTCGACTACATGTTTGAATTCCTTTTATACT
TTGAGCCCATGAATTGCCCTGTTTTAATCAATTTTCATTGTCCTTTACTG
CTCCCGTCATTTATATTTTTGATTTAGCGCTGCCCGTTACATCTCCTCCC
TTATCGGAATTTTTTCCTCTCACCTTCCTTCATCTCTTTTTTTTCCCCTC
CCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_p13.g1 MSMg01no186_p13.g1 CHROMAT_FILE:
MSMg01no186_p13.g1 PHD_FILE: MSMg01no186_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:08 2005
         (286 letters)



>mm_chr1_78455316_78456001
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctaggtgcacagttctgccccagatcagtgcagacttaacctgggattgcactggtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tcctaggtgcacagttctgccccagatcagtgcagacttaacctgggattgcactggtaa 427

                                                                       
Query: 61  ccagaaaaccctggggaaactgagagaggctctcttactggtcccactagagataccttt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cctgaaaaccctggggaaactgagagaggctctcttactggtcccactagagataccttt 367

                                                                       
Query: 121 attgaagagctaaagagcagtcacttaagtagagccttgggtttgctttgtgtggtgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 attgaagagctaaagagcagtcacttaagtagagccttgggtttgctttgtgtggtgctg 307

                                                                       
Query: 181 gcacagtgattttagctaaaggcaggtaaaattataatgctcagaaaacagggaggaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcacagtgattttagctaaaggcaggtaaaattataatgctcagaaaacagggaggaatt 247

                                                         
Query: 241 aggagcttggacaggaacggtaagtggggacctcgtacagagagga 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aggagcttggacaggaacggtaagtggggacctcgtacagagagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)