Query= MSMg01no187_a11.b1 MSMg01no187_a11.b1 CHROMAT_FILE:
MSMg01no187_a11.b1 PHD_FILE: MSMg01no187_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:12 2005
(234 letters)
>mm_chr1_185630918_185631552
Length = 635
Score = 420 bits (217), Expect = e-122
Identities = 229/233 (98%), Gaps = 1/233 (0%)
Strand = Plus / Plus
Query: 1 ataaaacattatccgtggtccatttaaagcccttcagccctgggataacgttttt-gctt 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ataaaacattatccgtggtccatttaaagcccttcagccctgggataacgttttttgctt 260
Query: 60 ggacagaagcttagttcatcctgtttggacccaactcagtttccatcgacatggtggtgg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacagaagcttagttcatcctgtttggacccaactcagtttccatcgacatggtggtgg 320
Query: 120 tccagggaataggaactatgaatgagttattaggggaattttaaagctgttgaaaaacct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagggaataggaactatgaatgagttattaggggaattttaaagctgttgaaaaacct 380
Query: 180 cagggggcagcttcttttttaggagctctggttacactgagccgagaggtttg 232
||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 cagggggcagcttctttcacaggagctctggttacactgagccgagaggtttg 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 635
Length adjustment: 9
Effective length of query: 225
Effective length of database: 626
Effective search space: 140850
Effective search space used: 140850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no187_a11.g1 MSMg01no187_a11.g1 CHROMAT_FILE:
MSMg01no187_a11.g1 PHD_FILE: MSMg01no187_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:13 2005
(664 letters)
>mm_chr1_185671061_185672124
Length = 1064
Score = 1214 bits (628), Expect = 0.0
Identities = 655/664 (98%)
Strand = Plus / Minus
Query: 1 tttcaataagactcacaaaggaatggaaaggaaaacagagcatgatcccaccaacagggt 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 736 tttcaataagactcacaaaggaatggaaaggaaaacagagcaagatcccaccaacagggt 677
Query: 61 aatagaaaggcaaccacaaatgattaagtaagaatggagctcagtaacacttgaagtgag 120
|||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 676 aatagaaaggcaaccacagatgataaagtaagaatggagctcagtaacacttgcagtgag 617
Query: 121 gtgaggagcaggcactaaggcaagctaagccttgagaagttagaagacatttgtaccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 616 gtgaggagcaggcactaaggcaagctaagccttgagaagttagaagacacttgtaccagg 557
Query: 181 ccaggatggggagactattccatagactgtaccgagaatgataaatatggatggtgctgg 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 556 ccaggatggggagactattccatagactgtaccaagaatgataaatatggatggtgctgg 497
Query: 241 tgctgactctgctcccattcctatgcttgggacagacattgttaaatatccacaatgctc 300
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 496 tgctgactctgctcccattcctatgctcggggcagacattgttaaatatccacaatgctc 437
Query: 301 ttctgttttcaaccaggttatgatctcagaatctttagcattatcacatccaaaatggct 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttctgttttcaactaggttatgatctcagaatctttagcattatcacatccaaaatggct 377
Query: 361 gtgtaagggctttgccatatggtttcagtctagagtctcttctgcaagcatagctgattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtgtaagggctttgccatatggtttcagtctagagtctcttctgcaagcatagctgattt 317
Query: 421 gagtgtgccaactagagtgtctcaatccagtaataaatatgctaacacaacttagacatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gagtgtgccaactagagtgtctcaatccagtaataaatatgctaacacaacttagacatc 257
Query: 481 caaagctatcaaatccatagctctcgtgttttgcatgcaagcatgtaaatgtatactgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 caaagctatcaaatccatagctctcgtgttttgcatgcaagcatgtaaatgtatactgtg 197
Query: 541 tgtgtgtgtacaggtacacatgtacatgggtgcacatgtgtgcagaggtcagaggacaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tgtgtgtgtacaggtacacatgtacatgggtgcacatgtgtgcagaggtcagaggacaac 137
Query: 601 cttggatatcattcttcaggcaccactttctttgagacagggtctttcactaatcttgaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 cttggatatcattcttcaggcaccactttctttgagacagggtctttcactaatcttgaa 77
Query: 661 ttca 664
||||
Sbjct: 76 ttca 73
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
