BAC Information

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BAC

Clone NameMSMg01-187B08
Chromosome1 (Build37)
Map Location 143,740,777 - 143,741,090
singlet/doubletsinglet
Overlap genenone
Upstream geneEG226472
Downstream geneLOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187B08.T7 (MSMg01no187_b08.b1)MSMg01-187B08.TJ (MSMg01no187_b08.g1)
ACCAG378562AG378563
length722751
length of high quality
(start - end)
319 (45 - 363)633 (90 - 722)
definitionCHROMAT_FILE: MSMg01no187_b08.b1 PHD_FILE: MSMg01no187_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:17 2005CHROMAT_FILE: MSMg01no187_b08.g1 PHD_FILE: MSMg01no187_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGTATACAACTATGACTGAAATGAGCTTTTAGGAGCTGAAAACA
AGTAAAATTTACCTATGTTACAGTAACACAATATTATTGCATTGCTCATT
TCTAATCTAGAGAATGGATGATAATTTCTGAAAAAAGGAAAATAATGAAA
TGAAAACAAAGACCATGATATGATGAAATAACTACACAGAGCGTTCAGTA
TATGATGTTGAAAGTAGTATTTATTTGAGATCTCTCATCAATAAAAAATG
ATAAAGAACAGCCGGTGTGTGTTAGAAAATCAGTTGAGATATTATTGCCT
GAAGTCACATGCTTTTTTATGAGCCCCCCCCGCATATAGGGAGAATTTAA
CTACATTAAATATATTTACCAAATTTAATATCATACACTTACTGAGAAAT
GATTCTGGAAATATTTTTGATTTTGTTGTAAATTTAATATAAGAATCTAT
TTGCCTTGTTAATTAGGTTTTCCTCAAGGAAATATGATTTGCAAGGTAGT
AAAGTATATTTATAAAAGTGTGTGAGTCTATTATTCTATGTATTTTCTAT
AACAAAGGTTAAAATTCTATAGAAACAATTTTTATTTAATTAATCCTCTT
AATCAATTACTTCGACTAATTCCCCAAGACAAGCTAACATTATTTAATTT
CACATTTCCAATGCATAGAAAA
TTTAATAAACCCACTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAATTCCT
AGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGCAGGTAACCCAA
TCACAAAAGAACTCACATGATATGTACTCACTGATATGTGGATATTAGCC
TAGAAACTTAGAATACCTAAGATACAAGATACAATCTGCAAAGCACATGA
AACTCAAGAAGAACAAAGACCAAAATGTGGACACTTTGCCCCTTCTTAGA
AATGGGAACAAAAAACCCATGGAAGCAGTTACAGAGACAAAGTATGGAGC
TGAGACGAAAGGATGGACCATCTAGAGACTGACATACGTGGGGATCCATC
CCATAATCAGCCTCCAAATGCTGACATTATTGCATACACTAGCAAGATTT
TGCTGAAAGGACCCAGATATAGATGTCTCTTTTGAGGCTATGCTGAGGCT
TAGCAAACCCAGAAGTGATGCTCACAGTCAGCTATTGAATGGATCACAAT
GCCCCCAACGGAGGAGCTAGACAAGGTACCTGAGGAGCTAAAGGGGTTTG
CAACCCTATAGGTGGAACAATAATATGAACTAACCAGTACACCCAGAGCT
TGTGTCTATAGCTGCATATGTATCAGAAGATGGCCTACTTGGCCATCATT
GGAAAGAGAGGCCCGTTGGTCTTGCAAACTTTATATGCCTCAGTATGAGG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_b08.b1 MSMg01no187_b08.b1 CHROMAT_FILE:
MSMg01no187_b08.b1 PHD_FILE: MSMg01no187_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:17 2005
         (319 letters)



>mm_chr1_143740573_143741291
          Length = 719

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaggtatacaactatgactgaaatgagcttttaggagctgaaaacaagtaaaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattcaaggtatacaactatgactgaaatgagcttttaggagctgaaaacaagtaaaat 459

                                                                       
Query: 65  ttacctatgttacagtaacacaatattattgcattgctcatttctaatctagagaatgga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttacctatgttacagtaacacaatattattgcattgctcatttctaatctagagaatgga 399

                                                                       
Query: 125 tgataatttctgaaaaaaggaaaataatgaaatgaaaacaaagaccatgatatgatgaaa 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 398 tgataatttctgaaaaaaggaaaatgatgaaatgaaaacaaagaccatgatatgatgaaa 339

                                                                       
Query: 185 taactacacagagcgttcagtatatgatgttgaaagtagtatttatttgagatctctcat 244
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 taactacacagagtgttcagtatatgatgttgaaagtagtatttatttgagatctctcat 279

                                                                       
Query: 245 caataaaaaatgataaagaacagccggtgtgtgttagaaaatcagttgagatattattgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 caataaaaaatgataaagaacagccggtgtgtgttagaaaatcagttgagatattattgc 219

                         
Query: 305 ctgaagtcacatgc 318
           ||||||||||||||
Sbjct: 218 ctgaagtcacatgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)