BAC Information

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BAC

Clone NameMSMg01-187C07
Chromosome1 (Build37)
Map Location 47,979,687 - 47,979,971
singlet/doubletsinglet
Overlap genenone
Upstream geneEG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187C07.T7 (MSMg01no187_c07.b1)MSMg01-187C07.TJ (MSMg01no187_c07.g1)
ACCAG378598AG378599
length732732
length of high quality
(start - end)
313 (45 - 357)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no187_c07.b1 PHD_FILE: MSMg01no187_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:22 2005CHROMAT_FILE: MSMg01no187_c07.g1 PHD_FILE: MSMg01no187_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGTATCACTATTTGCAGATGATATGATAGTATACATAAGTGATC
CCAAAGATTCTACCAGAGAACTTCTACAGCTGATAAAGAATTTCAGCAAA
GTGCCTGGATATAAAATTAACTCAAATAAATCAGTAGTCTTCCTTTATAG
AAATGATAAAAGGCTGATAAATTAGGGAAACAACACTCTTCACAATACTT
ACAGATCATATAAAATATGTTGGGGTAACTTTAAACAAACAAGTGAAAGA
TCTGTTTGACAAGAGTTCAAGAAAGGAGTTGAAGATCTCAGAAAATGGAG
ATCTCATGTATTGGCCCAACCAGCATAATAAAAATGCCATTCTACCAAAA
GCAATCTACAGACTCAGTGCAATCCTCATCAAAATCCCAACACAATTCTT
CAAATACATGGAAAGAGTAATTCTCAAATTCATCTGGAATAGTAAAAAAT
CCAGAATAGTGAAAACAATTCTTCACAATAAAAGAATGGCTGAGGGAATC
ACCATCCCTGACTTCAAGCTATACTAAAAAGCAATAGTGATAAAAACTAC
AGGGTATTGGTAAAGAAGCAGACATGTTGATTAACAAAATACTCACAGCA
GGTAAAGGGTGGGAGGGACTTTGGAGGAAGAGAGGAAGAGGAGGGAGAAA
AAAGTGTCCCCTATATTTTCTTCTCTCCCTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGAAGTACTGAGCCATATGTGA
ATTCTAATACCACCTTCTCCTACAGCTCTTTCATTTCTGTTCAATGAGTT
TTACTTCTAGTCATTATGGGGAAATTATGAAATATAGATTAATGGTTGCA
TTTTAATACTTTTGATGTGTTGTTTAATGAGGTATGTGCTGTTTCATAGC
TTACATCAAAGAGGCATCTGCTAGAAACCTTCTTATCATACACATCAAGT
GATTTTCGCACTAATAAGAATAATCATCTGAATAATGCAATACACTATTT
CTTTTTTATACTTTTGCATTTTCCTCTATGCAATTGGGTCCTATTTTGCA
ACAGTTTTAGCTTTGACTTTAAATCATACTCATTAATGGACATAAATTTC
TGAAAACAAGCTTTAATAATATGTAAGATTAAATAATAGTTACATGATGC
AGACATTTAATTCCTTTCTAAGATATAACATATAGTTCAAGGAATTATAA
CAATGGTATTACCAATCACAAATATCAGTTCTAAATGTGTCATTGACAAC
TTTGAGTATATAATACTCACTTTCAGTCATTGAAAATCATTAGTGAAATA
GTCCTAAACTTAAAATACATGATCCAGTTCAAAAAATGACTCAGTGGTTA
CAAGTACTTACTGATCTTTCAGAGGCCATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_c07.g1 MSMg01no187_c07.g1 CHROMAT_FILE:
MSMg01no187_c07.g1 PHD_FILE: MSMg01no187_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:22 2005
         (287 letters)



>mm_chr1_47979487_47980173
          Length = 687

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagaagtactgagccatatgtgaattctaataccaccttctcctacagctctttcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaagaagtactgagccatatgtgaattctaataccaccttctcctacagctctttcattt 426

                                                                       
Query: 61  ctgttcaatgagttttacttctagtcattatggggaaattatgaaatatagattaatggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctgttcaatgagttttacttctagtcattatggggaaattatgaaatatagattaatggt 366

                                                                       
Query: 121 tgcattttaatacttttgatgtgttgtttaatgaggtatgtgctgtttcatagcttacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgcattttaatacttttgatgtgttgtttaatgaggtatgtgctgtttcatagcttacat 306

                                                                       
Query: 181 caaagaggcatctgctagaaaccttcttatcatacacatcaagtgattttcgcactaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 caaagaggcatctgctagaaaccttcttatcatacacatcaagtgattttcgcactaata 246

                                                        
Query: 241 agaataatcatctgaataatgcaatacactatttcttttttatac 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agaataatcatctgaataatgcaatacactatttcttttttatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)