CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGG
AATTCTCTCACACTATACTAATCAAAATCTGGAATGTTTACTCACACATT
TGTCCTTGAGAGTTTCCTCTGCCACATGAGACATCTCTATGCTGTGATTT
GACATCTTCGGCATATAGTCATGGCTCCCTTTTGAACACAGCCAGTGCTA
GAAATCCAACCTTACCTATTACATACCTGGACTGTGCTTACTACCTGGCT
GACCTCATTTTCCGTTTTCCCTTCAGGTTAGCAGTCTGCCCTGTATGCTT
CTCACTCCGTAATTTGGAAGATGCACTTTTCACATCAAGAAATATATGGC
CAATTAAGAAAGTATCTCACCCAGATAGATTGAAAATGTATAACAGGGGT
TTTAAAATATTAAACATACGGTTATAGAGGTGGTGAGATTGATAAAATTG
CTTTCCTTGTAAACAGGGACACCTAACTACAATCTATAGCATCGCTGTAA
AAGCCAGACGCAGTGGCAGGTGCCTGTAATCTAGCACTTGGGAGGTAGGA
TGGAGGTAAGCTGATGCTCATTAAATAAGCAGACCAGCCAATTCAATAAG
CTCTGGTTCAATGAGAAGACATCTGTCAAAAACTAAGGAGAGGAACCGAG
GGCAACACCTGTCATGAACCTCTAGCATCCACATGTACAGGTGTTCATGC
ACTCACATGAACATATGCACACATTACATACATATATACTCAGATATATG
CATGTTAAACATAACAG

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAGACCAAAAGAGTCAAC
TAACCTGAGCCCTTGGGGCTCTCAGAGACTGAACCACTGACCAAAGAACA
TACCTGAGCTGGACCTACCACCCCCAATCCTACACACAAACATATGTAGG
AAATGTACAGCTAGGTCTTCATATGGGTCCCGAACAACTGGAGCAGGGAC
TATCCTAAAAATCTGTTGCCTGTCTGTGGGATATGTTCTTCAAGCTGGGT
TGCCTTGTCTGTCCTCAGTGGGTGAGGATGGGCCTAGCCCTGAAAANANT
TGATGTGCCGGGGGGATTTTTTTCCCCCCCCCGACCTCCACCCTTCTTGG
AGGAGAAGGAGGAAGGATATTTGCGCCAAGGTTAAAAAAAAAAAAAAATC
CCTTTTTTCGTGTTTTTTTTTTTTCTTTTTTTTTTTTTTCCCTTTTTTTC
CTTTCATATTTTTTTTTTTTCATTTTTTTTTTTCCTCCTTTTTTCTTTTT
AATTTATCCTTTCCCTTTTATCCTCCCCCTTTTTTTTTCTTTTTCCCCCT
ATTTTACGTTGTGGGGGTGCTTNNNNNNCNCNNNTNTTTTTTACTCCTCT
CTTTTTCCACCCCCTTTTAATCGCAAAGACACGAACTAATTTTNTTNNNN
NTATNTTTTTTTTTNTAN

Query= MSMg01no187_c23.b1 MSMg01no187_c23.b1 CHROMAT_FILE:
MSMg01no187_c23.b1 PHD_FILE: MSMg01no187_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:25 2005
         (724 letters)



>mm_chr1_141405156_141406279
          Length = 1124

 Score = 1073 bits (555), Expect = 0.0
 Identities = 570/575 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattctctcacactatactaatcaaaatctggaatgtttactcacacatttgtccttg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ggaattctctcacactatactaatcaaaatctggaatgtttactcacacatttgtccttg 516

                                                                       
Query: 66  agagtttcctctgccacatgagacatctctatgctgtgatttgacatcttcggcatatag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agagtttcctctgccacatgagacatctctatgctgtgatttgacatcttcggcatatag 456

                                                                       
Query: 126 tcatggctcccttttgaacacagccagtgctagaaatccaaccttacctattacatacct 185
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tcatggctcccctttgaacacagccagtgctagaaatccaaccttacctattacatacct 396

                                                                       
Query: 186 ggactgtgcttactacctggctgacctcattttccgttttcccttcaggttagcagtctg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 395 ggactgtgcttactacctggctgacctcattttccgttttcccttcaggttagtagtctg 336

                                                                       
Query: 246 ccctgtatgcttctcactccgtaatttggaagatgcacttttcacatcaagaaatatatg 305
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ccgtgcatgcttctcactccgtaatttggaagatgcacttttcacatcaagaaatatatg 276

                                                                       
Query: 306 gccaattaagaaagtatctcacccagatagattgaaaatgtataacaggggttttaaaat 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gccaattaagaaagtatctcacccagatagattgaaaatgtataacaggggttttaaaat 216

                                                                       
Query: 366 attaaacatacggttatagaggtggtgagattgataaaattgctttccttgtaaacaggg 425
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 attaaacatagggttatagaggtggtgagattgataaaattgctttccttgtaaacaggg 156

                                                                       
Query: 426 acacctaactacaatctatagcatcgctgtaaaagccagacgcagtggcaggtgcctgta 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acacctaactacaatctatagcatcgctgtaaaagccagacgcagtggcaggtgcctgta 96

                                                                       
Query: 486 atctagcacttgggaggtaggatggaggtaagctgatgctcattaaataagcagaccagc 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  atctagcacttgggaggtaggatggaggtaagctgatgctcattaaataagcagaccagc 36

                                              
Query: 546 caattcaataagctctggttcaatgagaagacatc 580
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  caattcaataagctctggttcaatgagaagacatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 724
Length of database: 1124
Length adjustment: 10
Effective length of query: 714
Effective length of database: 1114
Effective search space:   795396
Effective search space used:   795396
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)