BAC Information

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BAC

Clone NameMSMg01-187D22
Chromosome1 (Build37)
Map Location 97,350,745 - 97,351,060
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666025, LOC100040685, LOC383603, Tmem157
Downstream geneLOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187D22.T7 (MSMg01no187_d22.b1)MSMg01-187D22.TJ (MSMg01no187_d22.g1)
ACCAG378663AG378664
length736737
length of high quality
(start - end)
320 (46 - 365)546 (146 - 691)
definitionCHROMAT_FILE: MSMg01no187_d22.b1 PHD_FILE: MSMg01no187_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:30 2005CHROMAT_FILE: MSMg01no187_d22.g1 PHD_FILE: MSMg01no187_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATTTGGGATTTCTTGTTTCTGGCTCCGGCTGTTTGAATGCCTTC
CAGAAAAATCCTCTTTAACTTGTATACAGAACCTTGAAACAAGAACAGAG
GTTTAAATATAGAAAACAATAGCCCTTTGGATTTGGTTTCCTGAATTCTT
TTAATAGTTTCAAGTGAAAGAAGATCTTGACAGCAGGGTTCCCAATACAA
TGGTGTTTGGCCAAACAAAATGAACATATAAATTACAAATTTATAATCTC
AGAAATGCTATTGATTTGGATAAACTATGGCTTTTAAACTTAATTTTTGT
TCACAATATATGAGTTTTTATTTACCACCCCGCACCGATATTTACAAGCT
AAATAATTGTTCTGATCTTCCCCGATGGTTATCAATACCCACCATCAATT
TGTTTAGGAATAGAAAAATAATCTTTAAAAATTACCTTGACAAATAAAAC
TTCTGTTCTGGCAAGTTATCTAGATCTGTAATTGACATAATGGCAGGAGT
GGATAACCACAGAGAACCTGAAACTGCCACAGGGGTAATGACATTGTCAT
GGGATGAGAACTCATCCTCCAAGTTGTATATCATTCTCAAAATTATGTCT
CACCACCAGGCCAAATTAATAGATTGCTAAGAACTAAGTATGTCAAAGTA
AGGCAAAAGAAATCAATGCATTCATTTTTTGCACAG
CTTAGTTTNNNNCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAAGTA
TTTAATTTCTTTATTTCTTCCATGACCAAGTTATCATTGCCCAGAGAGTT
GTTCATTTTCCATGAGTATGTGGGCTTTCTGTTGTTTTTATTTTTATTGA
AGACAAGTCTCAGACCATTGTCATCTGATAGGATGCATGGGATTATTTCA
ATCTTCTGCTTGTTTTGTGTCAAATGATATGGCTAATTTTGGAGGAAATA
CCATGAGGTGCTAAGAAGAAGGTATATTATTTTGTTTTAGGTAAAATATT
CTGTAGTTATCTGCTAAATCCATTTGGTTCAATCTGGAGTTTCACTGTGT
CTCAGTTTAGTTTCTGTTTCCATGATCAATCCATTGGTGAGAGTGGTGTG
TTGAAGTCTCCCACTATTATTGTGCGAGGTTCAATGTGTGTTTTGAGCTT
TAGTAATGTTTTATACACAAATGTGGGTGACCTTGAATTTGGAGTGTAGA
CTTTCAGAATTGAGAGATCATCTTGGTGGATTTTTTTCTTTGATGAGTAT
GAACTGTCCTTCCCCATATCTTCTGATGACTTTTGGATGAAAGTCTATTT
TATTGGATATTAGAATGGCTATACCAGCTTATTTCTTGGGACCATTCGCT
TGGAAATTTTTTCCAGCCTTCTATTCTGAGATAGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_d22.b1 MSMg01no187_d22.b1 CHROMAT_FILE:
MSMg01no187_d22.b1 PHD_FILE: MSMg01no187_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:30 2005
         (320 letters)



>mm_chr1_97350541_97351260
          Length = 720

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatttgggatttcttgtttctggctccggctgtttgaatgccttccagaaaaat 64
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 520 gaattccatttgggatttcttgtttctggctccggctctttgaatgcattccagaaaaat 461

                                                                       
Query: 65  cctctttaacttgtatacagaaccttgaaacaagaacagaggtttaaatatagaaaacaa 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 460 cctctttaacttgtatacagaagcttgaaacaagaacagaggtttaaatatagaaaacaa 401

                                                                       
Query: 125 tagccctttggatttggtttcctgaattcttttaatagtttcaagtgaaagaagatcttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tagccctttggatttggtttcctgaattcttttaatagtttcaagtgaaagaagatcttg 341

                                                                       
Query: 185 acagcagggttcccaatacaatggtgtttggccaaacaaaatgaacatataaattacaaa 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 340 acagcagggttcccaatacaatggtgtttggccaaacaaaatgaacatataaatcacaaa 281

                                                                       
Query: 245 tttataatctcagaaatgctattgatttggataaactatggcttttaaacttaatttttg 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tttataatcgcagaaatgctattgatttggataaactatggcttttaaacttaatttttg 221

                           
Query: 305 ttcacaatatatgagt 320
           ||||||||||||||||
Sbjct: 220 ttcacaatatatgagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)