TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTACACTTTAAAACACTTTGAGCAGAAGACAGATACTTGAGATATA
GTACAAGAAAATGTGATTCTGTGAAGAGATATAATAGTAAATTATTTCAC
AAATACATTTTAATAAGCAAAAAAATGTTTTTGAAATCTTCAGATAAAAA
ATAAACGAAAGTGTGCTGTCATTGTGCTGATCATTGAATGTGATAACAGA
CTCCATTCACATGAAATAATGATCTATAGAATTACATGTTCTGTCGATTT
TCTTAAATAATCACTGTTATCAAAGATGTACCTTTTTTATTCTGGAAACT
GTTTTTAATATTCATGTAAGCTATGTGTATAATGCATACATGTACGAATC
ATCATAAAACTTTCTATCTAGCAGAAACTATAATATAATAAATATATGGT
GACACCAGAATGAAATCGAAATGAGTGTATCTTTATAGGCTTATGAGACA
TGTGTGCATGTTTGTCATATTTACTCTGAGATATATACAGATATAAAAAG
CCTGTTTTCATATGGCATATGAATATCGTAATTCAAACAAATAAACATTA
CTTCCCTTCTCTGTATACTCACTAAATTAAGTCAATACTTTGTAAATTTC
TGTGAGGAATTTATTTCATCAGTAACAATGTAGAGACCTTATAGCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGTGATAAATAGCAATGTGG
AAATGTAAGCTGAATAAACCCTTTCCTTCCCAACTGCTTCTTGGTCATGA
TGTTTGTGCAGGAATCGAAACCTTGATTATGACACTACCTGTCTAGGTGT
CTGCCAATAAATGAAGGGATAAAGAAATGTGGTACATTTGCATGATGAAA
TATCACCTTTCAAGAAATTCACAGAAAACTGAAATGAGCTGGTATATATC
ATCCTGACTGAGACAGCACAGACCCCAAAAGAAAGATATCATGTATTAAC
TTACATGGAAATGATAACTGTAAATACTTTAATAAATAGTCTACAATCCA
TATAAATCCATATAAGCACAGAGGTTAAATATAAAGTAAGGAACTGGGGG
GGGATAGCATAATTTAGGGAGGGGAAATAGAATGAATAATTTTATTANTG
NTNNNNNTTTNTNNNNNNNTNNTTTTTTTTTTTTTTTTTTTTTTNNNTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTT
NTNTTTTTTTTTTTTTTTTTTGTTTTNTTTTTTTTTTTTTTTTTTTTATT
TNTNTTTTTTTTTTTTTTTTNNGGTTTNNTTTTTTTTTTTTGT

Query= MSMg01no187_e03.b1 MSMg01no187_e03.b1 CHROMAT_FILE:
MSMg01no187_e03.b1 PHD_FILE: MSMg01no187_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:31 2005
         (652 letters)



>mm_chr1_27189874_27190925
          Length = 1052

 Score = 1085 bits (561), Expect = 0.0
 Identities = 627/649 (96%), Gaps = 2/649 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttacactttaaaacactttgagcagaagacagatacttgagatatagtacaaga 64
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gaatttttacactttaaaacactttgagcagaagacagatacttgagatatagtacaaga 793

                                                                       
Query: 65  aaatgtgattctgtgaagagatataatagtaaattatttcacaaatacattttaataagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aaatgtgattctgtgaagagatataatagtaaattatttcacaaatacattttaataagc 733

                                                                       
Query: 125 aaaaaaatgtttttgaaatcttcagataaaaaataaacgaaagtgtgctgtcattgtgct 184
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 732 aaaaaaatgtttttgaaatcttcagataaaaactaaaagaaagtgtgctgtcattgtgct 673

                                                                       
Query: 185 gatcattgaatgtgataacagactccattcacatgaaataatgatctatagaattacatg 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 672 gatcattgaatgtgataacagactccattcacatgaaataatgatgtatagaattacatg 613

                                                                       
Query: 245 ttctgtcgattttcttaaataatcactgttatcaaagatgtaccttttttattctggaaa 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 612 ttctgtcgattttcttaaataatcactgttatcaaagatataccttttt-attctggaaa 554

                                                                       
Query: 305 ctgtttttaatattcatgtaagctatgtgtataatgcatacatgtacgaatcatcataaa 364
           |||||| ||||||||||||||||||||||||||||||||| |||||  ||||||||||||
Sbjct: 553 ctgtttctaatattcatgtaagctatgtgtataatgcatatatgtataaatcatcataaa 494

                                                                       
Query: 365 actttctatctagcagaaactataatataataaa-tatatggtgacaccagaatgaaatc 423
           || ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 493 acattctatctagcagaaactataatataataaaatatatggtgacaccagcatgaaatc 434

                                                                       
Query: 424 gaaatgagtgtatctttataggcttatgagacatgtgtgcatgtttgtcatatttactct 483
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 433 caaatgagtgtatctttataggcttatgagtcatgtgtgcatgtttgtcatatttactct 374

                                                                       
Query: 484 gagatatatacagatataaaaagcctgttttcatatggcatatgaatatcgtaattcaaa 543
           ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 373 gagatatatacagatataaaaagcctgttttcatatggcatatcaatatcataattcaaa 314

                                                                       
Query: 544 caaataaacattacttcccttctctgtatactcactaaattaagtcaatactttgtaaat 603
           |||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caaagaatcattacttcccatctctgtatactcactaaattaagtcaatactttgtaaat 254

                                                            
Query: 604 ttctgtgaggaatttatttcatcagtaacaatgtagagaccttatagct 652
           |||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 253 ttctgtgaggaatttatttcatcagtaacactgtagagatcttatagct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)