Query= MSMg01no187_i08.b1 MSMg01no187_i08.b1 CHROMAT_FILE:
MSMg01no187_i08.b1 PHD_FILE: MSMg01no187_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:52 2005
(311 letters)
>mm_chr1_41331467_41332177
Length = 711
Score = 547 bits (283), Expect = e-160
Identities = 301/307 (98%)
Strand = Plus / Plus
Query: 4 ggaattccagactttcttatcaataccttattgctaagtgataagcagaggaagttttgt 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaactccagactttcttatcaataccttattgctaagtgataagcagaggaagttttgt 263
Query: 64 aagtggctttgaagatcctcggacagagagtggtattgaaaagccagaggaatcagagtt 123
||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct: 264 aagtggctttgaagatcctaggacggagagtggtattgaaaagccggaggaatcagagtt 323
Query: 124 ggctatcctttgcctcctgtctgcttcttcctagtgagtgtactgtcaagaacagtcaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggctatcctttgcctcctgtctgcttcttcctagtgagtgtactgtcaagaacagtcaag 383
Query: 184 cagttgagctcctgtcccgagcaagggacccatgctgccccccagtcaagcatccttgcc 243
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 384 cagttgagctcctgtcccgagcaagggacccaagctgccccccagtcaagcatccttgcc 443
Query: 244 ttggtccgcagccggccaggcagtgctgcagcaggtccctctggccagcaagcaggtgag 303
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 444 ttggtccgcagccggccaggcagtgctgcagcaggtccctctggctagcaagcaggtgag 503
Query: 304 gagccag 310
|||||||
Sbjct: 504 gagccag 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space: 212004
Effective search space used: 212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no187_i08.g1 MSMg01no187_i08.g1 CHROMAT_FILE:
MSMg01no187_i08.g1 PHD_FILE: MSMg01no187_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:52 2005
(651 letters)
>mm_chr1_41364001_41365051
Length = 1051
Score = 1143 bits (591), Expect = 0.0
Identities = 633/651 (97%), Gaps = 8/651 (1%)
Strand = Plus / Minus
Query: 1 atgcatgaagtctaagaagctagagtctgatatcaggggaccatcacatccataacaaca 60
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 1019 atgcatgaagtctaagaagctagagtctgatatcaggagaccatcacatcaataacaaca 960
Query: 61 gattcactagctcaaaatgacaaaataaaaacaagggcatgtgccttgcttcagatcgga 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 959 gattcactagctcaaaatgacaaaataaaaacaagggcatgagccttgcttcagatcgga 900
Query: 121 gctctatatctgagctgcccagtagaagcctctgaccaaactaatggtgagttttcttct 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 899 gctctatatctgagctgcccggtagaagcctctgaccaaactaatggtgagttttct--t 842
Query: 181 ctcagttagttctcactggaaagtgtctgacaaactaatctagaggtaagtgatgctaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ctcagttagttctcactggaaagtgtctgacaaactaatctagaggtaagtgatgctaaa 782
Query: 241 accagtcaagtcaacagctaagcccagtcatggcaaaagataggagctaagatctccatt 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 accagtcaagtaaacagctaagcccagtcatggcaaaagataggagctaagatctccatt 722
Query: 301 aatactggagccacaggtccaaagtgaggttcactcaaagacatcccacacccgaaaatg 360
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 721 aatactggagccacaggtccaaagtgaggttcactcaaagacatcccatagtcgaaaatg 662
Query: 361 tgatgtgtttccaggcttcagcatttagtagaattgatgtggtaatgcattcttatctta 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgatgtgtttccaggcttcagcgtttagtagaattgatgtggtaatgcattcttatctta 602
Query: 421 tgatgctgctttcaaatttacagtgataatcataatttcatgagcattttaaagtcctaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgatgctgctttcaaatttacagtgataatcataatttcatgagcattttaaagtcctaa 542
Query: 481 catacaaacaatgggttacagttaaaaagcaggtcaagaccaaactccctctacaaaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 catacaaacaatgggttacagttaaaaagcaggtcaagaccaaactccctctacaaaaga 482
Query: 541 ttttgactaagttgttgaccaaaaaaaaaaatccagaaccaaaattcatacaaaataagg 600
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 481 ttttgactaagttgttgacc------aaaaatccagaaccaaaattcatacaaaataagg 428
Query: 601 caaattgcataatgataaaggatcaacactcaaggagctacaatcccaact 651
||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 427 caaattgcataatgataaaggatcaacactcaaggagttacaatcccaact 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
