BAC Information

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BAC

Clone NameMSMg01-187L08
Chromosome1 (Build37)
Map Location 122,503,747 - 122,504,037
singlet/doubletsinglet
Overlap geneEn1
Upstream geneEpb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco
Downstream geneAI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187L08.T7 (MSMg01no187_l08.b1)MSMg01-187L08.TJ (MSMg01no187_l08.g1)
ACCAG378963AG378964
length703806
length of high quality
(start - end)
330 (7 - 336)291 (87 - 377)
definitionCHROMAT_FILE: MSMg01no187_l08.b1 PHD_FILE: MSMg01no187_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:06 2005CHROMAT_FILE: MSMg01no187_l08.g1 PHD_FILE: MSMg01no187_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATAGGGAGAGGATCCGCGGAATTCAGGCCACAAGAACCACGTAAAAT
GCCAGGTGAAGGAATGCTCTTCTGTAATCCCAGTGAAAACGTCAAACACT
GGGGCCTGGAGAGTTGTCTCAACAGCAAAGAGCCCTTGTTGTTCTTCCAG
AAGACCCAAGTTCATGCCAGGTGACTCACAACAACCTGTAACTCCAGCTT
CAGGGTATCTGATGCCCTTTTCTGGATGGATGCTATGGGCATACATATGT
CCATACTTACACAGGAACACACATACACATATTAAATAAAGTAAATAATT
TAAAATAAATCAGTAATAATAAAGGCAAACATTTTTTTTTTTTGCCCCCC
CCCCGTGAGAGATACAATAGTTTTCCTTAAGTCTTGCCCCCCCCAAAGAA
CTAACAATCCTGCCCTCTTATTTAATACAGTCATGAATAACCTGCATAGA
GGAAATAAGAGATGTAGCTTTGAAAGGAGGAACATATCTATTTCTGTTTG
CAGAAGCACATGTCTAGCTAACTATTCCCTCATAATCTTCTAAAGGAATC
CACGAACTACTATGTAGTTCATCATAGCTGTACCCCACTTGATCAACATA
TACAACCCCATGGTATTGCTCCATCCTTAACACAGATTATTTGCCATTCA
CACTCGTAACCTGTAGCACTGGTCTGCCTTGACGGTCATTCGTTAACACC
ATT
TCTTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTTCATCTTAT
ACAGTGAGTTAGAGAATAGATGTTTATTTTTCCCCCCTAGCACCTGTCCG
AGTCTTACTCCCGTTTCAAAAACCGTTTTGTTCCTATGTGAATGTCCACT
CGGAGGATTGCTTTCTCTTGCTCGCTTTCTCTGTCGCCCTGATTGATGCC
TCCCTCCATAGCGATCGTCTCTGCGTGGGGCTGGTGAAGCGGCAGCCCCG
AGGAGCCTGGAGGTGGCACGGGCGCCGTTGGACCGCGGGCCCTGGAGCTG
GCCACAGCTACTCGCTCTCGTCTTTGTCCTGAACCGCGCTGGTAGAGTGG
TTGTACAGCCCCTGGGCCATGACCCCCCCTTTTAGGACAAAAAAGATGCC
GGTGGCTTTCTTGATCTTGGCACGCTTGCCCTGTCACCATATTTTGACTC
TGTTACTCATCCCTTCTTATTTCCTGCCCTTAGATTCTGTCCTCTTTTGT
CCCGTTATATCCCTTCTTCCTCTTTCACTCCTTCCTCTTTCCCTTCCTTC
CTATCTATTTCTTTTTATTACCCTTCCATCACTTATCTTAACTCTACACC
CCATTCCTAATTTTCTTCTTCTATCTTCCCTTGTGTTTTTGCACCCTCCT
ATTTCCCCCACCTTATCCTTTACATCCCCTACCTTTCTATACCATCATAT
ATTCCGCCTACCTGCTTCCTTCCTTTCTCGCTTTATCCCCCCATTTTCCC
CTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_l08.g1 MSMg01no187_l08.g1 CHROMAT_FILE:
MSMg01no187_l08.g1 PHD_FILE: MSMg01no187_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:06 2005
         (291 letters)



>mm_chr1_122503547_122504237
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtttcatcttatacagtgagttagagaatagatgtttatttttcccccctagcacctg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 491 cagtttcatcttatacagtgagttagagaatagatgtttatttttcccccatagcacctg 432

                                                                       
Query: 61  tccgagtcttactcccgtttcaaaaaccgttttgttcctatgtgaatgtccactcggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tccgagtcttactcccgtttcaaaaaccgttttgttcctatgtgaatgtccactcggagg 372

                                                                       
Query: 121 attgctttctcttgctcgctttctctgtcgccctgattgatgcctccctccatagcgatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 attgctttctcttgctcgctttctctgtcgccctgattgatgcctccctccatagcgatc 312

                                                                       
Query: 181 gtctctgcgtggggctggtgaagcggcagccccgaggagcctggaggtggcacgggcgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtctctgcgtggggctggtgaagcggcagccccgaggagcctggaggtggcacgggcgcc 252

                                                              
Query: 241 gttggaccgcgggccctggagctggccacagctactcgctctcgtctttgt 291
           |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 251 gttggaccgcgggccccggagctggccacagctactcgctctcgtctttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)