BAC Information

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BAC

Clone NameMSMg01-187L09
Chromosome1 (Build37)
Map Location 189,271,919 - 189,272,242
singlet/doubletsinglet
Overlap genenone
Upstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
Downstream geneEsrrg, 9330162B11Rik, Ush2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187L09.T7 (MSMg01no187_l09.b1)MSMg01-187L09.TJ (MSMg01no187_l09.g1)
ACCAG378965AG378966
length7541,214
length of high quality
(start - end)
328 (45 - 372)---
definitionCHROMAT_FILE: MSMg01no187_l09.b1 PHD_FILE: MSMg01no187_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:06 2005CHROMAT_FILE: MSMg01no187_l09.g1 PHD_FILE: MSMg01no187_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCAAGGAGGCAGGAGCTCCCCCTACAGCCTAGTGACTCCATTGCA
GGAGTGTGGGCGAAATCACTAAGCACCAGGCTCAGAGTACCTAAGAAATG
AAAAGACAGAAGAAAACCATCTACAAGCTGTTTGGGGAATGCTTGGGATA
GCGTCTCTGCCTCTAAAAGAGGTTTCCTCCTTCTCTCCTCCCCCCCCCAA
CCCCGCCCCCGCTCATACACGCTGGCATTTCACAACCCTGCCAGTTCTTA
AATCTTTTCTTTTACCTCCACTGTTCAGTCATCCATAAAGCTGAACCTCT
GGTAAGCGAGGATTTTCTTCGACAGCACTTACACTTCCGCAAAAGGGACC
AAAGATGCCAGGTACCCCCACCCCAAACTCAGAGCTCAGCCTTTGAAGGC
AGTCTGGTCCCAGAGGTTTGCTTCGGACCTCCCACAGGGCATGAAACTTA
GTGTTCCTGCAATAATCCTTGTTTGTGGCCTATATTTCAGCTCAAGGAAT
TATATTCTTCCTTATCCGGATTTATCCCTTCCTGTGTGTTTCGACGGCCC
TCATTACCCGCGTGCTCCCTTGTCTTTTCCCCATCCTTTCTTGATATTTT
TCTGCTTTCCTCTAACACTTTTTATATGTCCGAATTACCCCCATTTTTTG
CAATTTCCCCTTTAAACTTTTTACTTTTTCTATCCCCCTATCACTGTTTC
CTTT
GCGGTTGTGTGGNNCCGTATTCCCTTTAGAGGTTACATAAACAAAAAGGA
AANNATGTAATGAATAAGATCCAGGGTTAGTAGTTTTGTTTTGTTCCCCG
CCCATTTCTCGGGCCCTTTATTTGTAAGTTTTCGGCGGTATATCTTCACC
GCTATTGTAATTGCGGCGATACACCTTTTTTGCTCCCTTTTTTTATTGTT
GTATTCCTCGCCACGCTCACACCATTATTCACATTACTTTATTTTTTTCT
TCCCTGCCTTTCTTTATAGTGCCCTCGTTTGTTTAGAGCCGCGCAAGTGA
GTGGTTATAGTGGGTAGGGAGTGTGGGAGATAGGATAATTAATAAATTAG
GAATAGAACGGGGATAATTAATAAAATAAAAAAGAGAGCACTTTAATCAA
ATGTGTTAAATGAAATAAATAATATAAGTAGTGTATTATTTTGCAGGTAT
TTAAATAGGAATAAAACTATAATATAAGGAGGAAAGAACCAAAATGAGGG
TGTTTGTTTGTTAAAAAAAAAACCGGAATTATATTATACGAGGGGGGAGA
AAAAATTTATTTTATTTTTTTATCCCCCCCCCCCCCCCCGCACAAAGTAT
GGTATTTTAAGGTAGGGGGTGAAGGATTTATAGAGGTTAACCCCCCCCCC
CCTCTCACAATAAATTTATTGAGAAATTTNTGGGCGGGTGGGTGTGGGGG
GGGGGTTTATATATAATAGGATATGTGGCTCAAAATGAGTTTATAAGTAT
GTGTCGAGTTGGGTCGTCATTTTTAGGCGATTCGTGTGTGGTTCAGGATT
TTTTATTCACCGATAAAGAAGAATATATGTGTATAATATATAGAGTTGAT
GGGCTATATACCCGGTTATATTGTGTGAGTTAGAGTTTGGGCGGCGAATA
ATAATTTGTCTGGTGGGGGATGTTACGTTTGAAGTTTAAGAATTATTATT
TTATAACTCTCCATCGCCGTCTGTTATTATGGACCCGTGTGGTGGGAATT
ATTATGGCGATGTGTAGCCGCGGATAGTTTATAATCCGGATTGATTATAT
AGAGCGTATGTTTATAAATAGGAGTGGGGTGTAGAATTAAGCTTTGGTGT
GTGTTAAGAGCGTGGTCTGGGGAGTAAAGAATAGAAGTCATTGGTATGCA
AGAGTTAAAATGATTTATAAAGACTGAATATGTCAGACATAGTGGATGTT
GTATACGTATGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_l09.b1 MSMg01no187_l09.b1 CHROMAT_FILE:
MSMg01no187_l09.b1 PHD_FILE: MSMg01no187_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:06 2005
         (328 letters)



>mm_chr1_189271717_189272442
          Length = 726

 Score =  569 bits (294), Expect = e-166
 Identities = 318/326 (97%), Gaps = 2/326 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   cggaattcaccaaggaggcaggagctccccctacagcctagtgactccattgcaggagtg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 526 cggaattcaccaaggaggcaggagctccccctacagcctagtgactccattgcagcagtg 467

                                                                       
Query: 63  tgggcgaaatcactaagcaccaggctcagagtacctaagaaatgaaaagacagaagaaaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 466 tgggcgaaatcactaagcaccaggctcagagtacctaagaaatgaaaagacagaagaaac 407

                                                                       
Query: 123 ccatctacaagctgtttggggaatgcttgggatagcgtctctgcctctaaaagaggtttc 182
           |||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 406 ccatctacaagctgcttgggggatgctggggatagcgtctctgcctctaaaagaggtttc 347

                                                                       
Query: 183 ctccttctctcctcccccccccaaccccgcccccgctcatacacgctggcatttcacaac 242
           ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 346 ctccttctctcctccccacccca-ccccgcccccgctcatacacgctggc-tttcacaac 289

                                                                       
Query: 243 cctgccagttcttaaatcttttcttttacctccactgttcagtcatccataaagctgaac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cctgccagttcttaaatcttttcttttacctccactgttcagtcatccataaagctgaac 229

                                     
Query: 303 ctctggtaagcgaggattttcttcga 328
           ||||||||||||||||||||||||||
Sbjct: 228 ctctggtaagcgaggattttcttcga 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 726
Length adjustment: 9
Effective length of query: 319
Effective length of database: 717
Effective search space:   228723
Effective search space used:   228723
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)