BAC Information

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BAC

Clone NameMSMg01-188B16
Chromosome1 (Build37)
Map Location 163,150,044 - 163,150,378
singlet/doubletsinglet
Overlap geneEG640200
Upstream geneRabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117
Downstream geneEG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703, Dnm3os
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188B16.T7 (MSMg01no188_b16.b1)MSMg01-188B16.TJ (MSMg01no188_b16.g1)
ACCAG379230AG379231
length742794
length of high quality
(start - end)
322 (45 - 366)137 (130 - 266)
definitionCHROMAT_FILE: MSMg01no188_b16.b1 PHD_FILE: MSMg01no188_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:38 2005CHROMAT_FILE: MSMg01no188_b16.g1 PHD_FILE: MSMg01no188_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATAGGCAGACACCAACTTGGGGCTGTGTGGAGGGAAGAGCTATT
TGGGAATCTGTTCTGCTGAGAGCTCAAAAACAAGTGCAATGATGTGAGCA
CGCCCTGTAATGAGTTCATGCTCCCCAAAGGCCACTCCTTATATAGCTGA
AGAAGTAACTTCCCATGGAGACCAACAGATGGTGTGGTTGCTTTTTTCCA
GTCACACAACAGATACTGTGGGATGCTCAGTAGGTCCCAGGCACCTGGCT
TCGAGCCTTTCTGGAGCATATTCTTAGCCATGCCAACAACTCTGAGGCAG
GCACTGAACATTTCTCTGTTTTGCCACATACCAGTACCTGCAAGATAGTC
AGATACTGCAAGCCACAGGACGACTGAGAGGCAGCAACTGGTCTGCTGTC
CGAAGCTTAAGCAAAACAATTTTTTTGGAGTTTTTTTCTTCTTCTTTGTT
TGTTTGGGCTTTTTAATTTATATGTAGTAGGGCCCTAGTTTTGAATATGC
AAACGAGATATGCATTTTTATGAAACAGTTTAATATTATAATTGTCATTG
GCCCTTTTTGCATTGTGCTATTTTCATGCAGAACTGGATTTACATGGAGA
CTCAGGACAACAGCCACTCCCTCCTGCTGCTAGAAAGGCAATGTCTGGTA
CTTCTCTGCAGGTAAACAGCCATGGGCCAGTTTCCAGAAGCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCTACTGAGGAGAGGTGGTG
ATTATGGGAGGTAGGGAACTCTCTCCATTTAGAAAGTAGAGTTTTGCTTT
GTTTTTTAAACTGTGGCCCTATTTGTTTGTTTACTTATTTACTTATCTAT
CTTCTTTGCCCTCATGTGTGTATATGCACGATGTGCATGCCTGGTGTCTT
CAGCATAACCCCGGGGCTGCAGGTGCAGATGGCTGTAAGGCACCTGTGGC
TGCTGGTGCAGATGGCTGTAATTTTTCTATGGGTGCAGGTGCTGATGGAT
GTAAGGAACCTTTTTTTGTTTTCCCCCGACGNCCCCCCGTATTTGTGTTT
TGAGGTGCTTATGTTTCCCCCCCCTTTAAAAAAAAAAAAAAACTTTGGTG
GGTGGGGTCTTTTCTTTATCTTAATTTATATCACCTTCACTTTCACTCCT
TTTTTCATTTTTCCTTATTACTCTCACTTCTTTGACTTTTTCTTCTATAT
CATTTATATTTTTTCCCTCTCTTCATTTTTCTTTCCTATTTTTTTACCTC
TTACCCCATTATTTTCCCCCTTTTTCTTTTTCTTTCCTCTTTTTTCCTTT
CTTATTTTTTACTTCCACTCTTTTATTTCAATTTCCTATCCCCTCTTTTT
CCTCCTTTTATTTTTTTTCACTACACACTCCTCTTTCTCATTTCTACTTA
CTCACCATCTATTTATATTGCTCTCTATACTTTTTTTTTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_b16.b1 MSMg01no188_b16.b1 CHROMAT_FILE:
MSMg01no188_b16.b1 PHD_FILE: MSMg01no188_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:38 2005
         (322 letters)



>mm_chr1_163149928_163150650
          Length = 723

 Score =  559 bits (289), Expect = e-164
 Identities = 315/335 (94%), Gaps = 19/335 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcataggcagacaccaacttggggctgtgtggagggaagagctatttgggaatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gaattctcataggcagacaccaacttggggctgtgtggagggaagagctatttgggaatc 392

                                                                       
Query: 65  tgttctgctgagagctcaaaaacaagtgcaatgatgtgagcacgccctgtaatgagttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgttctgctgagagctcaaaaacaagtgcaatgatgtgagcacgccctgtaatgagttca 332

                                                                       
Query: 125 tgctccccaaaggccactccttatatagctgaagaagtaacttcccatggagaccaacag 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgctccccaaaggccacttcttatatagctgaagaagtaacttcccatggagaccaacag 272

                                                                       
Query: 185 atggtgtggttgc-ttttttccagtcacacaacagatactgtgggatgctcagtaggtcc 243
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atggtgtggttgctttttttccagtcacacaacagatactgtgggatgctcagtaggtcc 212

                                                                       
Query: 244 caggc------------------acctggcttcgagcctttctggagcatattcttagcc 285
           |||||                  |||||||||||||||||||||||||||||||||||||
Sbjct: 211 caggcacttccttataaagctcaacctggcttcgagcctttctggagcatattcttagcc 152

                                              
Query: 286 atgccaacaactctgaggcaggcactgaacatttc 320
           |||||||||||||||||||||||||||||||||||
Sbjct: 151 atgccaacaactctgaggcaggcactgaacatttc 117


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 723
Length adjustment: 9
Effective length of query: 313
Effective length of database: 714
Effective search space:   223482
Effective search space used:   223482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)