BAC Information

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BAC

Clone NameMSMg01-188G24
Chromosome1 (Build37)
Map Location 67,867,882 - 67,868,195
singlet/doubletsinglet
Overlap genenone
Upstream geneAcadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
Downstream geneErbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188G24.T7 (MSMg01no188_g24.b1)MSMg01-188G24.TJ (MSMg01no188_g24.g1)
ACCAG379458AG379459
length7831,163
length of high quality
(start - end)
321 (62 - 382)---
definitionCHROMAT_FILE: MSMg01no188_g24.b1 PHD_FILE: MSMg01no188_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:05 2005CHROMAT_FILE: MSMg01no188_g24.g1 PHD_FILE: MSMg01no188_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCATACTTNTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCCACCCAGGACCAGTATTACATTAAAACCA
ATAGGTCCCCACACAATTGTAGTTTTGTCCTCTGGGCACTCCGTCTATAG
GCTGCCACTAGTTGAGGCATCTCCAAAAGGAATCACAAGGGCTTCAATTT
CTAGCTTGGGCAGTTCCATCACAGGATGGTGAAGTTTAAGGAGTTATCTG
TGGCTGGCCTGTGTCCAAGTATAAGCACCTGAAAAACACAAGGCAGAACC
CCTGTTGGAGATGACAGTTAGTTATATTGATGGGTGTCTAGGAATTTGAC
TTCCCCTGGAACAAGGTTGCTTTTATGTATTTTTTACACGACCCCCCCAG
AGAGGCTGAGTAGGGACTAGCTCAGATGCATAACTGCGAGATCTGGAAAG
ACATCATGAGGCAGTGTAAGAGCAAAACCATTGAGTCCCTTACAATGTTT
CAGAGGTGGTCTGGTTCAGATCTCCTAGACCATTCCTGGATGGGGTCCAC
AGCAACCATGTTTCCTGCAACTTAAAAGCAGAAGGAATGATGGGGATCTG
AACTTCTCCATCAATGTTTGCATAGTCAGTCTAGTCTTTCCAGAAACATA
TTCAAGGTGTGTGTGTTCACTAATCCTCTAAGTTTATCTGAGAACTAATT
AATATATTTGTACCGTGATCTTCTCTTCTCTATTTCTTCTTCATATAATT
TATACCATTACATCGTACATGTATTAACCATTN
CGCGCACCGCGGCGGGTGGCGTACGTGCTGTGTATGTGTGTTGTCTTTTT
CCCACCCCCCCGAAAAAAGAACTAGACCTGGAGGTACGGCGTGCCGTTTT
CCCAAACAGAGGGGNAGACTATAGTAAGGATGTTGCGCGAAAAAAGAGGA
GGTATTAGCAGGTTCATAACCCGCGCCAGAATGAGGACGATCACTGGGAG
TTTCCCCCCCGAAGATACAACGAGAAGGCGCAATACCCCGACGTGGTTTG
TATCGTGGATGGAAAATAGGCCCGACAAGAAACCGCCCAAGAAATAACCA
CTTATGACAAGTTGTCGCGGATGGCATCAAGAAACCGTGATATTTATTAT
AAGACGAGGGGAAATTACGACGCAGCTACGGGTCTATCATCGCGGCCTAT
TATTGTGGACGCGGCGAGTAATAAATATATCGAAGCTATAGGCCCGAATA
GAGCAGCGATATCGGAACGGATAGTCGTCCGTATAACCGAGTTGTACACA
ACACCCTCGTAAATACAAAAAAATTAGTTGTGTTGTTTTAATATTCCGGC
TCCCACCCCTATCCGGTACTGTGGGAAAAACGGTGTTGGTTCTACGTCTC
GCTTTCCGTTTTTTCTTTTAATCGCTAAAAAAAATCAACCCTCTATCCGC
CCCTCTCGTACTTATAGTGTTCGCGCGCATTTGCGGACCACGAATAACGT
GATCAACTTAGCGCCGTACATGGCCGTATATGGGACAGTTACGTGGGTGA
TCGACGCGAGGGAAAGAGGATAAGAGTAAAAAGGAGAGGGATGGGAATGA
AAATAGCGAAGAAGATATAATGAGGAAAGGAGCGGGGAGAGAATACACGG
GCGCGATAAAAAACGAACACGGCAAGGCGCTAATCGGGCGCAATTATAAT
CCGCGCCGCAGATATTTGCCGCGTATAAACGAAGCGCGACTGTGGAAGCG
CAGCCGAAAAAAGAATAAATTAGTGCTAGTTCCTCGGTGGCGAGGATAGT
TGGGTCGGAGGGAGGCCGCGCGGTAGAAGCGATATGGGAGAGCGATAATT
TAAAGTATCGATATCAATTCGCGCGGCGGTACGACTATCCAGCGATACAC
ATAACGACCGTATGTTATCAGATTATAGCAGATCGATATGATGCGCGGAA
TGGGCGATACGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_g24.b1 MSMg01no188_g24.b1 CHROMAT_FILE:
MSMg01no188_g24.b1 PHD_FILE: MSMg01no188_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:05 2005
         (321 letters)



>mm_chr1_67867678_67868397
          Length = 720

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacccaggaccagtattacattaaaaccaataggtccccacacaattgtagttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattccacccaggaccagtattacattaaaaccaataggtccccacacaattgtagttt 459

                                                                       
Query: 65  tgtcctctgggcactccgtctataggctgccactagttgaggcatctccaaaaggaatca 124
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tgtcctctgggcact-tgtctataggctgccactagttgaggcatctccaaaaggaatca 400

                                                                       
Query: 125 caagggcttcaatttctagcttgggcagttccatcacaggatggtgaagtttaaggagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 caagggcttcaatttctagcttgggcagttccatcacaggatggtgaagtttaaggagtt 340

                                                                       
Query: 185 atctgtggctggcctgtgtccaagtataagcacctgaaaaacacaaggcagaacccctgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 atctgtggctggcctgtgtccaagtataagcacctgaaaaacacaaggcagaacccctgt 280

                                                                       
Query: 245 tggagatgacagttagttatattgatgggtgtctaggaatttgacttcccctggaacaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tggagatgacagttagttatattgatgggtgtctaggaatttgacttcccctggaacaag 220

                          
Query: 305 gttgcttttatgtat 319
           |||||||||||||||
Sbjct: 219 gttgcttttatgtat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space:   221832
Effective search space used:   221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)