Query= MSMg01no188_h01.b1 MSMg01no188_h01.b1 CHROMAT_FILE:
MSMg01no188_h01.b1 PHD_FILE: MSMg01no188_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:06 2005
(315 letters)
>mm_chr1_41496351_41497064
Length = 714
Score = 571 bits (295), Expect = e-167
Identities = 307/311 (98%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 4 ggaattccactctgctgacatctagcctgtatctctcttgttatgcttgtgagtacacag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 513 ggaattccactctgctgacatctagcctgtatctctcttgttatgcttgtgagta-acag 455
Query: 64 gatgacaggacacatcacagtagttctctgggaatctgggtagatacagagggagtagag 123
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 454 gatgacaggacacatcacagtagttctctgggaatctgggtagatacggagggagtagag 395
Query: 124 agatgtgaagagtgtatacatgtggagcactgacttagtccggttgagaaagcctgtggt 183
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agatgtgaagagtgtatacacgtggagcactgacttagtccggttgagaaagcctgtggt 335
Query: 184 gtagccttgtccttggatggggtgaaaaatatttgaagcaaaacccgaaagccagatgtt 243
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 334 gtagccttgtccttggatggggtgaaaaatatttgaagcaaaacctgaaagccagatgtt 275
Query: 244 ctaaatacatttgttaaatggtcagaaatcttctgtttttccctttgtcattgaatcttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ctaaatacatttgttaaatggtcagaaatcttctgtttttccctttgtcattgaatcttg 215
Query: 304 tggcattgtta 314
|||||||||||
Sbjct: 214 tggcattgtta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 714
Length adjustment: 9
Effective length of query: 306
Effective length of database: 705
Effective search space: 215730
Effective search space used: 215730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no188_h01.g1 MSMg01no188_h01.g1 CHROMAT_FILE:
MSMg01no188_h01.g1 PHD_FILE: MSMg01no188_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:06 2005
(608 letters)
>mm_chr1_41458652_41459659
Length = 1008
Score = 1168 bits (604), Expect = 0.0
Identities = 607/608 (99%)
Strand = Plus / Plus
Query: 1 tcttatttacccttcagcatgatggactacaagctttaagagtaagctaaactcaaacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttatttacccttcagcatgatggactacaagctttaagagtaagctaaactcaaacct 260
Query: 61 tccccttgcaagtcactcctgttatgcatccggtcacaaaaatgagatagccaatgtgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccccttgcaagtcactcctgttatgcatccggtcacaaaaatgagatagccaatgtgct 320
Query: 121 atcatcttgtgtactaaggtgcattttgggccaggactctgaaagcagtcatattgttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcatcttgtgtactaaggtgcattttgggccaggactctgaaagcagtcatattgttaa 380
Query: 181 tgaaaatgttttacatatatgcattgaaagaataatttgggatagttacctccaccattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaaatgttttacatatatgcattgaaagaataatttgggatagttacctccaccattt 440
Query: 241 tgcccataccagaatacaactgaaaattactccaatactttgagaagtaatttcaaaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcccataccagaatacaactgaaaattactccaatactttgagaagtaatttcaaaagg 500
Query: 301 acgtaacagaaaataatgcaatataatctttaaataaaagtaattacacttacattattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acgtaacagaaaataatgcaatataatctttaaataaaagtaattacacttacattattg 560
Query: 361 tgtgaattcaattcactttaattaaaacaatctaagcatatttctctaacaagactctaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgaattcaattcactttaattaaaacaatctaagcatatttctctaacaagactctaa 620
Query: 421 gctttactacttttcttaatatcaatgcagatatgtaaatgttaatgtaaacatatctat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctttactacttttcttaatatcaatgcagatatgtaaatgttaatgtaaacatatctat 680
Query: 481 gctacaatgtacattaatataaacatttttggttacatgagacaaatgatttaagcatat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctacaatgtacattaatataaacatttttggttacatgagacaaatgatttaagcatat 740
Query: 541 tctaaaccttaatcaatgcagttctcaccccagcactttcatcattccacctcctgagta 600
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 tctaaaccttaatcaatgcagttctcatcccagcactttcatcattccacctcctgagta 800
Query: 601 taaaatgg 608
||||||||
Sbjct: 801 taaaatgg 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
