CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTACTGAATTCAGAGCTTGTTGGCTTCAAGGTCTTTCTAGGACGT
TGGAACACTGGCCAAGGCTTAGCTATGTCAGAATTCAATCTTAAAAGGCA
CTTATAATAAGATAATACTAAAAGAGAGCAAGTGGATCCATACACCAGAC
AAATGCAGGGATAGGGTAAGAATATATGGATTATGAGAACACCAGAGTTC
CAGGAGGTGAGTTTCCGTGAAACCCTTTGCCTTGTGAGTGCTCCCAGACC
TCTTGGCCTGCTAAGCAAACTTCACTGGAGCGTTCACAGCATTCTCCCCC
TTTCTTTTCATATTTCTGCCAAAGTTCTGAAGTGTCCCGCCTTGTTGTAG
TTACAGATCTCAGGAGTGCTCTAAAGATGAGTGGAAACAACGATTTACTA
ATAAAATACTGCCAATAATAATATCAAGTAGTAATATATATTGAACCCAA
TCCAGGGGATTCAATGCACTTAGGTCATTTTTTTTAATCTCTGGCCAATT
CATCAATGTTCCAAGTGTCCAAGTGACTTTTTCTAATATCTGAAATTTCT
GCCTTAATATATGCTATGTCCTGCCCTATTGCTAAGACTACTACTTCTAA
GACATTAATCTTCGTCTCCAATTCTTTACATGGCTCTGTGGTGTAGTATT
TATAAACCATGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGGTTCACAAGATCAAACTTAGG
TTGTTGGACTTAGGAGGAAAGCATTTTTACTCTCTAAGACATACAAGATT
AGGAGAGTTCTTAACAGCATGGCAGGATGACATGGGGATGCTCTGAGAAG
AGGTCTATTCCTATTAGAAAAAAACTGTGGTGCCCTTCTATAGTCCTGGA
AGAGTCAGGAAGATCCCATTCCTTGTAGTTAGTCAATAGCCCAGATTATT
TGCTGGCAGTCAAGCTGTTTCAGCTTTCCAAAATAACAGATTAAGGGGAG
GAGGGAGATCTAGTGCTATGTGATTGCAGGGTCACAGTAGGACTCTTGTC
AGTTTCCTAAGATCTGGTTATTTTGAGGGTCTGGTTAGTTTTAGAGTCTG
CAGAACTCTTTTGGAAAAGCCAAGAGTACAGGCTCAAGACAGTCACAGAA
AGCTGCCTGTCATGCCTTAGGTGAGCATTACATTAGTATTGCTCTTGCTC
CCATTCCGGCACCACCAGCCCCCCTGACCCCTGCTCTCCTCAGGAAAGAG
ATACCAAATCTCACAATTTCATGTATCACAGGTTGTCTTTGAACTTGCTA
TGCAGCAAGTGGTGAGTAAAACTTCGGATTCTGCCTCCCTTTCAGAATGT
TGGGATTTAGTAATGTGCTGCCACACCCAG

Query= MSMg01no189_a06.g1 MSMg01no189_a06.g1 CHROMAT_FILE:
MSMg01no189_a06.g1 PHD_FILE: MSMg01no189_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:52 2005
         (640 letters)



>mm_chr1_119400085_119401125
          Length = 1041

 Score = 1100 bits (569), Expect = 0.0
 Identities = 623/643 (96%), Gaps = 5/643 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgggttcacaagatcaaacttaggttgttggacttaggaggaaagcatttttactctct 60
           |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 841 ttgggttcacaagatcaaacttaggttgctggacttaggaggaaagcaattttactctct 782

                                                                       
Query: 61  aagacatacaagattaggagagttcttaacagcatggcaggatgacatggggatgctctg 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 781 aagacatacaagattaggagagttcttaacatcatggcaggatgacatggggatgctctg 722

                                                                       
Query: 121 agaagaggtctattcctattag---aaaaaaactgtggtgcccttctatagtcctggaag 177
           || |||||||||||||||||||   |||||||| ||||||||||||||||||||||||||
Sbjct: 721 aggagaggtctattcctattagaaaaaaaaaaccgtggtgcccttctatagtcctggaag 662

                                                                       
Query: 178 agtcaggaagatcccattccttgtagttagtcaatagcccagattatttgctggcagtca 237
           |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 661 agtcgggaagatcccattccttgtagttagtcaatagccctgattatttgctggcagtca 602

                                                                       
Query: 238 agctgtttcagctttccaaaataacagattaaggggaggagggagatctagtgctatgtg 297
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 601 agctgtttcagctttccaaaagaacggattaaggggaggagggagatctagtgctatgtg 542

                                                                       
Query: 298 attgcagggtcacagtaggactcttgtcagtttcctaagatctggttattttgagggtct 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attgcagggtcacagtaggactcttgtcagtttcctaagatctggttattttgagggtct 482

                                                                       
Query: 358 ggttagttttagagtctgcagaactcttttggaaaagccaagagtacaggctcaagacag 417
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggttacttttagagtctgcagaactcttttggaaaagccaagagtacaggctcaagacag 422

                                                                       
Query: 418 tcacagaaagctgcctgtcatgccttaggtgagcattacattagtattgctcttgctccc 477
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 421 tcacagaaagctgcctgtcatgccttaggtgagcattacgttagtattgctcttgctccc 362

                                                                       
Query: 478 attccggcaccaccagcccccctgacccctgctctcctcaggaaagagataccaaatctc 537
           ||||| |||||||||||||| ||||||||||||||||||||||||||  |||||||||||
Sbjct: 361 attcctgcaccaccagcccctctgacccctgctctcctcaggaaaga--taccaaatctc 304

                                                                       
Query: 538 acaatttcatgtatcacaggttgtctttgaacttgctatgcagcaagtggtgagtaaaac 597
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 acaatttcatgtaccacaggttgtctttgaacttgctatgcagcaagtggtgagtaaaac 244

                                                      
Query: 598 ttcggattctgcctccctttcagaatgttgggatttagtaatg 640
           ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 243 ttcggattctgcctccccttcagaatgttgggatttagtaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1041
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1031
Effective search space:   649530
Effective search space used:   649530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)