BAC Information

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BAC

Clone NameMSMg01-189A12
Chromosome1 (Build37)
Map Location 111,411,102 - 111,411,383
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626474
Downstream geneEG666508, Cdh7, LOC100041429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189A12.T7 (MSMg01no189_a12.b1)MSMg01-189A12.TJ (MSMg01no189_a12.g1)
ACCAG379852AG379853
length726732
length of high quality
(start - end)
314 (46 - 359)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no189_a12.b1 PHD_FILE: MSMg01no189_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:53 2005CHROMAT_FILE: MSMg01no189_a12.g1 PHD_FILE: MSMg01no189_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAA
GAGCCAACATCAAAGTAAATGGAAGCAACCCCACTAAAATCAGGGACTAG
ACAAGGCTGCCCACATTTTCCCTACCTATTCAATATAGTACTTGAAGTCC
TAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGA
AAGGAAGAAGGCAAAATATCACTATTTGCAGGTGATATGATAGTATATAT
AAGTGACCCTAAAAAATCCAACAGAGAACTCTTAAACCTGATAAACAGCT
TCAATGAATGTTCTGGACCTAAACTAANCCAAACAGTCAATGACCTTTCT
GTACACAAAGGATAAACAGGCTGAGAAAAAAATTAGGGAAACGACGCCCT
TCTCAATAGTCACAAATAATATAAAATACCTTGGTGTGACTCTAACTAAG
GAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCTGAAGAAAGAAAT
TAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCA
GGATCAATATAGTAAAAATGGCAATCTACAGATGCAATGCAACCCCCATC
AAAATTCCAACTCAATTCTTCAACGAATTAGAAAGGGCAATCTGCAAATT
CATTTTGGATTACAAAAAACCTAAGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCTGGAGAATATCAGCAGCTG
GCATGATAATGAGTCCACTCCATTGCAAATGAATTCATTGTTATTCCATC
CCCGCTGTCTTCCATTCACAGTTGCATGGCATCTATACATAAATAAAAAA
TAGGTATTGTGCATAGCTGAGCTCAAGTGATCTGTAAGAACTGTATTTGC
AAACAAAAGAAAAGAGTAGGAAATAAAAGCAAATGAAGCTACCAGATGAG
GAAGGAGAAAACAGTCAGGTTTTTTACAAAGAACTGGAAGATAAGAAAAT
CAATTTTATTTTTTATACCAATGCTANTCCCAGTCACTTTTGCAACAGTC
AGTCTTCTTTGTCTTATTATTTCATAACATAAGTGAAAGATTATGTAATT
TTTCAAGAAGCATACAGTTAATATATTTTCACAATAATACAGCAAAAATA
AGTCCATTCATGCTTATTAGTAAATTATTAGTTACTCCTTTGGTTGGAAT
TAATAAGTTTCTGTTAAAATGGATTTCCTGACTTAAGGTGGACCACAGCT
TGGAATAGAGCAGATGATGAGGAATCTTGAATCAGATAGCACTGAAATGA
CTCACATAAGACTGGAGATGGAATAGCTAAAAACAAAAGCAAAAATATCC
ATCATGTTTTAGAAATGTAAACGACCGAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_a12.g1 MSMg01no189_a12.g1 CHROMAT_FILE:
MSMg01no189_a12.g1 PHD_FILE: MSMg01no189_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:53 2005
         (285 letters)



>mm_chr1_111410902_111411586
          Length = 685

 Score =  514 bits (266), Expect = e-150
 Identities = 278/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggctggagaatatcagcagctggcatgataatgagtccactccattgcaaatgaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggctggagaatatcagcagctggcatgataatgagtccactccattgcaaatgaattc 260

                                                                       
Query: 61  attgttattccatccccgctgtcttccattcacagttgcatggcatctatacataaataa 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attattattccatccccgctgtcttccattcacagttgcatggcatctatacataaataa 320

                                                                       
Query: 121 aaaataggtattgtgcatagctgagctcaagtgatctgtaagaactgtatttgcaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aaaataggtattgtgcatagctgagctcaagtgatctgtaagaactgtatttgaaaacaa 380

                                                                       
Query: 181 aagaaaagagtaggaaataaaagcaaatgaagctaccagatgaggaaggagaaaacagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaaaagagtaggaaataaaagcaaatgaagctaccagatgaggaaggagaaaacagtc 440

                                                     
Query: 241 aggttttttacaaagaactggaagataagaaaatcaatttta 282
           ||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtgctttacaaagaactggaagataagaaaatcaatttta 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)