BAC Information

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BAC

Clone NameMSMg01-189C18
Chromosome1 (Build37)
Map Location 115,060,427 - 115,060,704
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666615, LOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189C18.T7 (MSMg01no189_c18.b1)MSMg01-189C18.TJ (MSMg01no189_c18.g1)
ACCAG379947AG379948
length719751
length of high quality
(start - end)
320 (49 - 368)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no189_c18.b1 PHD_FILE: MSMg01no189_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:04 2005CHROMAT_FILE: MSMg01no189_c18.g1 PHD_FILE: MSMg01no189_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTATTTAGTTCTGTTCTCAACTTTTTAATAGAGTTATTTGG
TTTTCTGGAGTCTACCTTCTTGAGTTCTTTATATATTTTGGATATTAGCC
CTCTATTGGCTGTAGGGTTGATAAATATCTATTCCAAATTTGTGGTTTAC
CATTTTGTCCTATTAATAGTGTTATTTGCTTTACAAAGCTTTTAAATTTT
TGAGGCCCCATTTGTCAATTGTTGATCTTAGAGCATAAGCCATTAATGTT
CTATTCAGCATATTTTCCCCTGTACCTGCATGTGTGAGGCTTTTCTCCAC
TTTCTCTTCTAATATATTGTGNGTATCCGNTCTAAGCCGCATGTCCTAGA
TCCACTTGGGATTGAGGTTTATTCAGGGAAATAAAAAAGAATAAATTTTC
ATTCGGCTATATGTTGACTGCCAGTTGAACCAGCACCATTTGTTGAAAAT
GCTATATTTTTTCCACTGGATGATTTTAGCTCCTTTGCTAAAGAGCAAGT
GACCAGAGGTGTGTGAGTTCATTTCTGGGTCTTCAATTCCACTCCATTGA
CCTGTTTCTTTACCAATATCATGAAGCTTATATCACCATGGCTCTATAGT
ACAGCTTGAGGTCAGTGATGGTAATTCCCCAGAAGATGTTTTATTGTTGA
GACTATTTTTCTGCTATAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGAATTTAATGAAAGTGACAGA
TTCCACACCAGTAGTTCCTGTTTTTTTTTTTTATATACCATTAGAAATGC
ATTGTTTAGGGCAAGTTACATAAAAGTGAGCCTGGGACCCTCAATAAAAA
AATAGGCCTAGTCAGATAGAAAGCAAATCCATGTTTAAAATTGCTTTCCA
AAATCCTTGGATGTGGCACAGTTATCTGTGCCTGGCTGGGTCGCCCAGGT
TCCAGAGATGTCTGTGAATGGTGGCACAGATTTTTAGTTTTAGAATTTGA
GAGATGCAATATTTTTCTGTACACCTCCCCACCTGTTCTTAAACAAGTGG
AAAAAGACAAGGTTTCTCTTAAAAGATAAAATTGACTCAAAGCTTGACGG
ATACATGGATATCAAAAGAAATTCATTTCCTTCTGTGTTAGTCCCTGGGA
AGTGGTTCTGTGAACCTGGTTCTACACATGTACCCAAAATCCCAGCTGAG
CTGTGAATTGCGACGTAGAAAATGTTTTTCTGGCAGGATATGATATCTGA
TCGCCTTCCTATGTGCTAACTAGCTATTGTCTCCACGTTTTTCTCTTGAT
CTGGATGATTGAATAGAGGCCCATGCTCTCAATCTTAGTTCCACTGTAAC
CATCTTTGTACGTCCCCCATGCGGTCTTTCCGATGGAGTGTTGAATACCT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_c18.g1 MSMg01no189_c18.g1 CHROMAT_FILE:
MSMg01no189_c18.g1 PHD_FILE: MSMg01no189_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:04 2005
         (287 letters)



>mm_chr1_115060227_115060908
          Length = 682

 Score =  485 bits (251), Expect = e-141
 Identities = 273/283 (96%), Gaps = 5/283 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgaatttaatgaaagtgacagattccacaccagtagttcctgttttttttttttatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||     |||
Sbjct: 478 attgaatttaatgaaagtgacagattccacaccagtagttcctgtttttctt-----tat 424

                                                                       
Query: 61  accattagaaatgcattgtttagggcaagttacataaaagtgagcctgggaccctcaata 120
           || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 423 actattagaaatgcattgtttagggcaagttacataaaagtgagactgggaccctcgata 364

                                                                       
Query: 121 aaaaaataggcctagtcagatagaaagcaaatccatgtttaaaattgctttccaaaatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aaaaaataggcctagtcagatagaaagcaaatccatgtttaaaattgctttccaaaatcc 304

                                                                       
Query: 181 ttggatgtggcacagttatctgtgcctggctgggtcgcccaggttccagagatgtctgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttggatgtggcacagttatctgtgcctggctgggtcgcccaggttccagagatgtctgtg 244

                                                      
Query: 241 aatggtggcacagatttttagttttagaatttgagagatgcaa 283
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tatggtggcacagatttttagttttagaatttgagagatgcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 682
Length adjustment: 9
Effective length of query: 278
Effective length of database: 673
Effective search space:   187094
Effective search space used:   187094
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)