BAC Information

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BAC

Clone NameMSMg01-189F14
Chromosome1 (Build37)
Map Location 100,620,235 - 100,620,456
singlet/doubletsinglet
Overlap genenone
Upstream geneHisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189F14.T7 (MSMg01no189_f14.b1)MSMg01-189F14.TJ (MSMg01no189_f14.g1)
ACCAG380066AG380067
length691741
length of high quality
(start - end)
222 (75 - 296)224 (390 - 613)
definitionCHROMAT_FILE: MSMg01no189_f14.b1 PHD_FILE: MSMg01no189_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:19 2005CHROMAT_FILE: MSMg01no189_f14.g1 PHD_FILE: MSMg01no189_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTAATGGCATAAGCTTGGACTCTAATGGCTCTCACAGCGATGGGACATT
ACTGATGACACTGCAGTCCCANAGATAGTGAATACGGACCAAAGTGAAGT
TAGGCCTTCACTTTGCATACAAGGAAACTATGGTAGCAGAAGATGACTCT
ATGATGACAAAAGAGGGCACAGTGATGGCACAAAAAGCCACAGGGAAGTT
GTAAAAAGGTATTATAATGACATGGCAGGGCTCTGTGATGACGCAATGGG
GTGCAATTATGATAAAATATACCACAGTGATGGCAAAGCACAGAAGCGTT
TGAGTTTTTTTGTCCCACCCCCCCCACAGTGATGGCACAATAGAGTGCAG
GTTTGGCACACCAGTACAGATACAGCAACAATTGTGCAACTATGACACTA
GAAAACACAATCATGGCACAATAGGCATAGTGCTGACTTATCAGGTTACA
ATGGATGGTACAACTGGGCACAATTATGGCATTTTGCTGAATGTGATGAT
ATCAATGGAAACTTTAATAGCAACACTAGGGAAGAATGATTACACAGTAG
TATTATAGTAATAGTATAATAAGGAACTATGATGTCACAATATGGCAATA
ATTGTTCATTGAGACCGATCAAAGGACTGGTAAGACCTAGGGATGGCACT
ATAGAATTCGGCGATGCGACATAGGTCACATTATGAAAGAA
CCCCCCCCTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTCTAATGTT
GAGGTGATTAGGCAGTGTGAATAGTATGTGTAATGCAGACTTAATGTAGG
GTAGAATAGCTTAGAAGCTTCAGAAGTTTAGAAGCAGTCATTAGTTGTTT
ATAAGATAAAAACTCCTCTAAACAGAAAGTTGCTTGAATATCAAGACAGA
GTTCACATGTGTTACAAGAAAATATAAGATTAAAATAGGCAAGCTCAAAA
TGAATCTCTGTTGGTGAGGTATTTCCTGAATATGCAGGAATTCCTGGGTT
CACTCTTCAGCACTGTATAAAAAGAGTATGGTGACACTCAGCTGCAATCA
CAGCACTTGGGAGGTGCATGCAGGAGGCTCAGAAGTTCAAGATCATCGTT
GGATTCATTGCCAGTTCAAGGTTAGCTTAGACTACATAAGATTCCAAAAA
TGTAAAAATAATAGAAGTTGAAGTGTTTTAAATAGTAGTGGCCCACATAG
ACTCATGGATTTGAATGCTTGACCCAGAGGAAGTGGTATTATTAGGACAT
ATGATCTTCGTGGAGGACATGGGTCACTCTGGAGGCAGGCTTTGGGGGTC
TCATAGAAGGTCAAGCTACACCCAGTGTGGGATTTACCTTCTGCTCCCTG
TGGACCAAGATATGGTACTCTCAGTAGGTCCTGCACTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_f14.b1 MSMg01no189_f14.b1 CHROMAT_FILE:
MSMg01no189_f14.b1 PHD_FILE: MSMg01no189_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:19 2005
         (222 letters)



>mm_chr1_100620035_100620656
          Length = 622

 Score =  391 bits (202), Expect = e-113
 Identities = 217/222 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagtgaatacggaccaaagtgaagttaggccttcactttgcatacaaggaaactatggt 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atagtgaatatggaccaaagtgaagttaggccttcactttgcatacaaggaaactatggt 363

                                                                       
Query: 61  agcagaagatgactctatgatgacaaaagagggcacagtgatggcacaaaaagccacagg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 362 agcagaagatgactctatgatgacaaaagagggcacagtgatggcacaaaaagccacaag 303

                                                                       
Query: 121 gaagttgtaaaaaggtattataatgacatggcagggctctgtgatgacgcaatggggtgc 180
           |||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||
Sbjct: 302 gaagttgtaaaaaggtattataatgacacggtagggctctgtgatgactcaatggggtgc 243

                                                     
Query: 181 aattatgataaaatataccacagtgatggcaaagcacagaag 222
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aattatgataaaatataccacagtgatggcaaagcacagaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)