BAC Information

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BAC

Clone NameMSMg01-189G11
Chromosome1 (Build37)
Map Location 41,536,174 - 41,536,481
singlet/doubletsinglet
Overlap genenone
Upstream geneIl18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189G11.T7 (MSMg01no189_g11.b1)MSMg01-189G11.TJ (MSMg01no189_g11.g1)
ACCAG380101AG380102
length744713
length of high quality
(start - end)
315 (57 - 371)295 (73 - 367)
definitionCHROMAT_FILE: MSMg01no189_g11.b1 PHD_FILE: MSMg01no189_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:23 2005CHROMAT_FILE: MSMg01no189_g11.g1 PHD_FILE: MSMg01no189_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTNTACTTATTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTAACTCCTCCTGCACCATGCCTGCCTGGATGCT
GCCATGCTCCTACCTTGATAATAATGGACTGAACCTCTGAACGTGTAAGC
CAACTCAGTTAAATGTTGTCCTTATAAGAGTTGCCTTAGTCATGGTGTCT
GCTCACAACAGTAAAACCCTAACTAAGACAGGTATGATCCACCTAACAAG
ATCCACAACCCTTAAGAAAAATCCCACAGCAGCCCTCATCTATGAATGCT
GGGCATGAGTGTTCATGTCTCACTGCCCTGCTTTGATCTTATCATCCAGT
TCTTAGGCAAGCCATCCCATTTGTTATGTCCCANATCAGACCATAATCCC
TATGACATGCAGAAGTCACTGTATGACAGTAGCCATACATAACCTCCTGT
TCTTGCAATCTCTCATCCATGACTTTTCTTGACCAGAGGGAGGGAGGGAC
TATGATATTGATATCACATTTATGGTTTGAATACCCACGGGCAGTTACTC
TCCAAATGTTGCCCAGCTGTGATTTTCTGTATAACAACCAAACTTGGCCC
AAAGAGCTTCTCTGATAAAGGCTGAGAGATGTGCTGGTCTGCGTATTGCC
ATAAATATTTATCAGTCTAATATGTCTGACTTACAAAATAATACTATTCT
CCCTGGAGTCTATGACCTTAAGAGCCATGAGTCCTTTGTACCTC
CGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTTGTGCTGATCAACAAGTTATTGGC
ACAAGACCTTCCCTTAGGTGACTCTATATACCCAATGGCACTCGAGTGGC
AAGAATGGATTTCCCAGTGCTGGAGAGATGGTTGAGGGGGTAAGAGCACT
GACTGATCTTCTTAAGGTCCTGAGTTCAAATCCCAGCAACTACATCATGG
GTCACAACCATGTACAGCTACAGTATATATATATATATATATATATATAT
ATATATATATATATATATATATACACATAATAATATCATAAGATAAATAA
GTCTTTTTTTTTTTTTTCACCACCCCCCGCCCCCAAAAAAAGGATTTCAC
CTTGGCAGAAGGTATTTCTTGATAATAAATACTTGGATAGGTGTGTGTCT
CTTTGTCCAATCCCCCTCCTGGCTCGAAGCTGTTGTGCAGGTCTGGTGCC
CCTTACCACAGACCCCATGCAGTGATCCTACCATTCTGTACTTACTCTAC
TGGGCTGGCATACCACATTTATTGATTTGCCTACATTGAACCATCTTTGC
ATGCCAGGGTGGAAAGCAACTTGGTCATGATTTATGAACATTTCCATGTA
TTGTTGAGTCTAGTTTTGCAATATTTTGCTGAGGCTGGTTGCTCCTGAGT
TTAACAGGCCGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_g11.b1 MSMg01no189_g11.b1 CHROMAT_FILE:
MSMg01no189_g11.b1 PHD_FILE: MSMg01no189_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:23 2005
         (315 letters)



>mm_chr1_41535800_41536514
          Length = 715

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaactcctcctgcaccatgcctgcctggatgctgccatgctcctaccttgata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaattcttaactcctcctgcaccatgcctgcctggatgctgccatgctcctaccttgata 623

                                                                       
Query: 65  ataatggactgaacctctgaacgtgtaagccaactcagttaaatgttgtccttataagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ataatggactgaacctctgaacgtgtaagccaactcagttaaatgttgtccttataagag 563

                                                                       
Query: 125 ttgccttagtcatggtgtctgctcacaacagtaaaaccctaactaagacaggtatgatcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttgccttagtcatggtgtctgctcacaacagtaaaaccctaactaagacaggtatgatcc 503

                                                                       
Query: 185 acctaacaagatccacaacccttaagaaaaatcccacagcagccctcatctatgaatgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acctaacaagatccacaacccttaagaaaaatcccacagcagccctcatctatgaatgct 443

                                                                       
Query: 245 gggcatgagtgttcatgtctcactgccctgctttgatcttatcatccagttcttaggcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gggcatgagtgttcatgtctcactgccctgctttgatcttatcatccagttcttaggcaa 383

                   
Query: 305 gccatccc 312
           ||||||||
Sbjct: 382 gccatccc 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)