BAC Information

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BAC

Clone NameMSMg01-189I06
Chromosome1 (Build37)
Map Location 125,799,260 - 125,799,542
singlet/doubletsinglet
Overlap geneDpp10
Upstream geneLOC666983
Downstream geneLOC666998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189I06.T7 (MSMg01no189_i06.b1)MSMg01-189I06.TJ (MSMg01no189_i06.g1)
ACCAG380178AG380179
length728728
length of high quality
(start - end)
324 (46 - 369)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no189_i06.b1 PHD_FILE: MSMg01no189_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:31 2005CHROMAT_FILE: MSMg01no189_i06.g1 PHD_FILE: MSMg01no189_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCATTTAGTTCTGTACTCCATTTTTAAATTGGGTTATTTGGTTT
TCTGGAAGTTAGCATTTTGAGTTTTTTATATATTTTGGATATTAGCACTC
TCTCACAGATGTATGGTTAGTGAACATTTTTCCCAATCTGTAGGTTGTTG
ATTATTCCTATTAATGGTGTTCTTTGTTTTGCAGAAGATTTTCAGATTCA
TGATGTCTGATATCAACTCTTTTTTTTTCTTTTATTGGATATTTTTTTAT
TTACATTTCAAATATTATCTCCTTTCCCAGTTCCCCTCTGAAACTCTGTA
TATAATCCCCCTTCCCTCTTTTTCTACCCCCCCGCTCCCCCACCCACCCA
TCCACTCCTGCCTCCCCACCTTTCATACCCCTACACCAAGGCATAGAGCC
TTCATAGGACCAAGGGTCTCTCCTCTCATTGATGCCCAACAAGGCCATTC
TCTGCTACATATGTGGCTGGAGCCATGGGTTTCTCCATGTGTACTCCTTG
GTTGCTGGTTTAGTTCCTGGGATCTCTGGGGAGGGGGAGTCTGGTTGGTT
GATATTTTTCATCCTATGGGTTTGCAAACCCCTTCAAATCCTTCAGCCTT
TTCTCTAAATTTCTTTATTGGGGGACCCTGTTTTTCCGTTCCATTGGGGC
AAGGCTGTGGACCATCCCTTTTATTGTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGAAGCACAGAAATTCTGGAA
CCAGGCCTTCTTTTTCTGCATCTGGGGGATAGGCATGCATTCAAGACAGC
AAAAGCAAATGGTTCATTTTTTGTAATTATGCTCAAATTCTTATGTTTAA
GCGAAACACCATCTGAACAGAAGCTCATCTTCCTGGAGCGGAGCATCTTG
GCATGCTGCAGTCACTTATTAATGCCATCACATTGCTCAATTACTCCAAA
CCACAGATGCACGAATGAGGCTGTGAGGGGGAGGCTCCCCGGAGCAAGCT
GGGTGAGCCAGTTCTTTCCACCACCCCCCGTTTTCTCTCTTATTTCTTCA
GATACCTTTCTCTCTTCTTCCCTCCCACATTGGCTACCTTCCTTCTTTCT
CAGTCTCTCCAGAAGATAAATAAAAACTACCAACTATTTATTTTTTCTAG
TTTACATATTTTGGAAGTCAATATTTTTAAAAGATGGAATATTTCACCAA
GTAGCCCATTGGAGTGATTGATAACTGTCATTTGTGTAATTAGTCACTAT
AATTACATGAGTAAATGACTCTGAAATGGAGCTCCTGTTAATCACATTTG
TTTAATGGGAAATAAGTTCACTGTCTTTACAGGGATTAGATAATGGTGAA
GTTGGTGTTGGGGTAGCGTACCGTGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_i06.g1 MSMg01no189_i06.g1 CHROMAT_FILE:
MSMg01no189_i06.g1 PHD_FILE: MSMg01no189_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:31 2005
         (283 letters)



>mm_chr1_125799060_125799742
          Length = 683

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagaagcacagaaattctggaaccaggccttctttttctgcatctgggggataggcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagaagcacagaaattctggaaccaggccttctttttctgcatctgggggataggcat 260

                                                                       
Query: 61  gcattcaagacagcaaaagcaaatggttcattttttgtaattatgctcaaattcttatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcattcaagacagcaaaagcaaatggttcattttttgtaattatgctcaaattcttatgt 320

                                                                       
Query: 121 ttaagcgaaacaccatctgaacagaagctcatcttcctggagcggagcatcttggcatgc 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ttaagcgaaacaccatctgaacagaagctcatcttcctggagcggagcttcttggcatgc 380

                                                                       
Query: 181 tgcagtcacttattaatgccatcacattgctcaattactccaaaccacagatgcacgaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcagtcacttattaatgccatcacattgctcaattactccaaaccacagatgcacgaat 440

                                                      
Query: 241 gaggctgtgagggggaggctccccggagcaagctgggtgagcc 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggctgtgagggggaggctccccggagcaagctgggtgagcc 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)