AGCGGNNNNAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCATTCTACTGAATAAATTATAATTTTAAACAA
CAAGAACATACAAACATACATCGAAGGTGTATATGCTTTTAAGTTATCAA
AAGTAAGCATATACAATAAAGGAAACTCATATCTTTAAGAGAAAGAAAAT
AAGTTACAGATAGATACTCGAAAGAACATTAAAATGGAAAACATGAAACC
AAGCATAACTTTTATCTCATAAATATAAATTATACTTGTCTATTAAAAGA
AAAAGAACATTTCTTATGCTGAAACTCAGTGAAAACCAGTTTCAAATTAT
GTTGAGGAAACACAGGTATGACAGTAACTTAGAAAAATTGAAATTAAATA
GAAAAACTAAAGTAGAAGAAAACTGAAAGTTACAATCCTGAAGCAAGTAA
TTAATAGCATATAATATATAACTTTGTCTTATAAAATTGAATCAAACATA
ATTATTGTATTACAAAAATATGTGACTTAAAAATCCTGTAGTCAGGTTCT
ATAGATGGTTATAGAAAAATAAAAAAAATATTGCTATGGATTGCTTGATT
CAAGATAGGAAAGAAGTATAGTGCCAAAAGGTTTATTGCTTGTGGCAATC
TAATCTAAAAATCTTGAACAAGTGAACACAGAATAGCATTTGGTGAACTA
CTCAGAAGATTGAAAACTGTANAATTAAAGGCAGGAGGA

TCGAATGACAGNTGNNGTAGGCCNTGGNNNCGGCCGNCTTGGNCCCGNTC
CGAAACTTTTTATNGGGTGGAACACCTAGTGAAAGGGTACCGCGGGAAAT
CTTGAAATGGAGGTTATTTGGGGGCAAAAGGAATTAACCCCCGGCCTTTT
GGATTGTGGACCCCCCCCCCCGGTTTTCTTCTGGGTTTTCATAAAAGGGG
GGGGGGAGAAACCCTGGGGTCCTTTTTTTAAAAAAAATTTTTGGGAGGAG
AAAAAAACATGGGGTGTTTTGAGAAAAAAAACCCACAAAAAGAGGCTTTT
TTTTTTTTTCTCCCCCCGGGGAGAAAAAAACAAAACCTTTGTGTGGGGGG
GCTCCTTTTTTTTTTCTCCTTTTGGGGAGAAGAGAAAAAAATTTTTTTGT
TTTTTTTTTTTTCTCCCCCCCCCCCCCCCCCCCTCCCTCTCTTGTTGTTG
GTTTGTGGGGTGGAGGGGGGAAAAAAAAAAAAAAAAAAATAACAAAAACC
CCCCCCCCTCCTATAATATAATAAACACTTCCTTTCTTTCTGCCGCCTCC
CTATTTTTTTTTTTTAATAAAACCCCCCCCCCCCCCCCTCCCCCCCTCTT
TTNTTTTTTCCTTAAGGGAGTGGGGGGGAGGGAGGGAAAAAGAAGAAAAA
AAGGAAANAGTGTTGGGCGCTTCTCCTCCAACACAACAACTACCACACCC
TTCTCCAANNATATAACTATTTTTTTTGTTTTTGTTTGTTTGTGGTGGGG
GGGGGGG

Query= MSMg01no189_k03.b1 MSMg01no189_k03.b1 CHROMAT_FILE:
MSMg01no189_k03.b1 PHD_FILE: MSMg01no189_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:39 2005
         (665 letters)



>mm_chr1_32054734_32055799
          Length = 1066

 Score = 1220 bits (631), Expect = 0.0
 Identities = 652/659 (98%), Gaps = 1/659 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattctactgaataaattataattttaaacaacaagaacatacaaacatacatcg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctactgaataaattataattttaaacaacaagaacatacaaacatacatcg 264

                                                                       
Query: 65  aaggtgtatatgcttttaagttatcaaaagtaagcatatacaataaaggaaactcatatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggtgtatatgcttttaagttatcaaaagtaagcatatacaataaaggaaactcatatc 324

                                                                       
Query: 125 tttaagagaaagaaaataagttacagatagatactcgaaagaacattaaaatggaaaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttaagagaaagaaaataagttacagatagatactcgaaagaacattaaaatggaaaaca 384

                                                                       
Query: 185 tgaaaccaagcataacttttatctcataaatataaattatacttgtctattaaaagaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaaaccaagcataacttttatctcataaatataaattatacttgtctattaaaagaaaa 444

                                                                       
Query: 245 agaacatttcttatgctgaaactcagtgaaaaccagtttcaaattatgttgaggaaacac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaacatttcttatgctgaaactcagtgaaaaccagtttcaaattatgttgaggaaacac 504

                                                                       
Query: 305 aggtatgacagtaacttagaaaaattgaaattaaatagaaaaactaaagtagaagaaaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggtatgacagtaacttagaaaaattgaaattaaatagaaaaactaaagtagaagaaaac 564

                                                                       
Query: 365 tgaaagttacaatcctgaagcaagtaattaatagcatataatatataactttgtcttata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgaaagttacaatcctgaagcaagtaattaatagcatataatatataactttgtcttata 624

                                                                       
Query: 425 aaattgaatcaaacataattattgtattacaaaaatatgtgacttaaaaatcctgtagtc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaattgaatcaaacataattattgtattacaaaaatatgtgacttaaaaatcctgtagtc 684

                                                                       
Query: 485 aggttctatagatggttatagaaaaataaaaaaaa-tattgctatggattgcttgattca 543
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 685 aggttctatagatggttatagaaaaataaaaaaaaatattgctatggattgctttattca 744

                                                                       
Query: 544 agataggaaagaagtatagtgccaaaaggtttattgcttgtggcaatctaatctaaaaat 603
           |||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||
Sbjct: 745 agataggaaagaagtataataccaaaaggtttattgcttgtggtaatctaatctaaaaat 804

                                                                      
Query: 604 cttgaacaagtgaacacagaatagcatttggtgaactactcagaagattgaaaactgta 662
           |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 805 cttgaacaagtgaacacaaaatagcatttggtgaactactcagaaaattgaaaactgta 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1066
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1056
Effective search space:   691680
Effective search space used:   691680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)