BAC Information

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BAC

Clone NameMSMg01-189K08
Chromosome1 (Build37)
Map Location 160,043,645 - 160,043,961
singlet/doubletsinglet
Overlap genenone
Upstream geneRasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
Downstream gene6430517E21Rik, Astn1, Pappa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189K08.T7 (MSMg01no189_k08.b1)MSMg01-189K08.TJ (MSMg01no189_k08.g1)
ACCAG380259AG380260
length721838
length of high quality
(start - end)
322 (45 - 366)228 (76 - 303)
definitionCHROMAT_FILE: MSMg01no189_k08.b1 PHD_FILE: MSMg01no189_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:40 2005CHROMAT_FILE: MSMg01no189_k08.g1 PHD_FILE: MSMg01no189_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTTGGAATTCTATGGGATATTAGAAAGCCTCCACACTCCTGGAA
GTTGAACAATGTTCTACTCAATGATCTCTGGGTCACTTTCTAGAATTCAA
TGAAAACTAAATAGCTAAGAAACTAAATAACTTTAAAAATTACTAAAAAT
ATATTGTTTTAAGAAATATCTGGTTTTGTTTTTGTATTTTTTTCTTTTAC
CCAAGCAGTCCACTGCACAATTCAGAGACATCTTGCAACCAGAGCAGAAG
CTGATTAATCCAGAAACAGCAGTCTAGCATTACTGATGGCTTAAGGAGAA
GTAAATGTGGCAGGCTTTTTTCCACCCCCCGCCACTGCCAGGGGCACTGT
TGGTGATGTCTGCATAAATTTTTGTGTAAGATAGAAAAGCAACAGGTAAC
CAGTGAGCTGAAAACTAAGAAGGTTTCCAGAGAATCATGGTATTTTCTGA
CATTTTTTTTTCCTGCACACATAGCCTGACAAAGATGTTTTATTGTTAGT
TGTAATGGTCTCTCTGTCTCTCTGTCTCTGTCTCTCTGTCTTTCTGTCTC
TCTGTCTCTCTGCCTCTCTCTCTCTCTTTCTCTCTCTCTCACAAACTCAC
ACAAACACACAATAATTATACATATACACATCCACATATTCCTATACCTG
AAAGCCATTTGATTTTGTTGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTTTGAGCCCCATTTT
TAATGGGGTTATTTGATTTTCTGGAGTCTCCTTCTTGAGTTCCATATATA
TATATATGTATATATATATATTGGACATTAGTCCCCTATCTGACTTAGGA
TAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGAT
GGTGTCTTTTGCCTTGCAGAAACTTCAAAAGGGGGAAAACATTGAGTTTA
TAAGAGACTTTGACCCCGTTTTATGAAGAGAGAGCTCTACAAAAGGGGGG
GAATATTTTTTTTTTGCCCCCCTCCCCCCCCCNNTTTTTAAGAAATGGTG
CAGATTAATGGCTTCATCCCCCCCTATATAAAAAAATTTTTCTTCTTCCG
TTCCATTTTTTTCTCCGGTTTATTCACACCGTCTTCATAACACTTGGTTT
TCACCTTTTCCCCCCCTACTGTTTTTTTATTAAATAATTAAATCCCCTAA
TCCTCCTACACTTCTTTCCTTTTTTTCCTCCCCTCCAACTGGAAACAATA
TGCCGGTTTTTCGCCTTACCCTTCCTTATTTTCCACATATCGACCCCATT
TTCCTTTTCCCCTTCCTTTTTTTCTTTTTTATCCCATCCTTTCTCATTTT
CCTGATTTCCCTTTTGTGTCCCTTTCTCCCCTCCTCTCTTTCCCCCATTT
CCTTTTTTTATTCCTTCCCCCTTATTTTTCTTTCCCTCCTCCTCTTCACT
TTTCCTTTTTCCTTTGTTTCTTTTCTCACTTCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_k08.b1 MSMg01no189_k08.b1 CHROMAT_FILE:
MSMg01no189_k08.b1 PHD_FILE: MSMg01no189_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:40 2005
         (322 letters)



>mm_chr1_160043441_160044162
          Length = 722

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactttggaattctatgggatattagaaagcctccacactcctggaagttgaaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactttggaattctatgggatattagaaagcctccacactcctggaagttgaaca 264

                                                                       
Query: 65  atgttctactcaatgatctctgggtcactttctagaattcaatgaaaactaaatagctaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgttctactcaatgatctctgggtcactttctagaattcaatgaaaactaaatagctaa 324

                                                                       
Query: 125 gaaactaaataactttaaaaattactaaaaatatattgttttaagaaatatctggttttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaactaaataactttaaaaattactaaaaatatattgttttaagaaatatctggttttg 384

                                                                       
Query: 185 tttttgtatttttttcttttacccaagcagtccactgcacaattcagagacatcttgcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttttgtatttttttcttttacccaagcagtccactgcacaattcagagacatcttgcaa 444

                                                                       
Query: 245 ccagagcagaagctgattaatccagaaacagcagtctagcattactgatggcttaaggag 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 ccagagcagaagctgattaatccagaaacagcagcctagcattactgatggcttaaggag 504

                            
Query: 305 aagtaaatgtggcaggc 321
           |||||||||||||||||
Sbjct: 505 aagtaaatgtggcaggc 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)