BAC Information

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BAC

Clone NameMSMg01-190F11
Chromosome1 (Build37)
Map Location 81,895,607 - 81,895,911
singlet/doubletsinglet
Overlap genenone
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190F11.T7 (MSMg01no190_f11.b1)MSMg01-190F11.TJ (MSMg01no190_f11.g1)
ACCAG380722AG380723
length719742
length of high quality
(start - end)
310 (36 - 345)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no190_f11.b1 PHD_FILE: MSMg01no190_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:33 2005CHROMAT_FILE: MSMg01no190_f11.g1 PHD_FILE: MSMg01no190_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACTA
TCATAAATCCCAGACAAGAAAATGCCTTCACCATTAAGGACAACAATTTT
CTTCCTCAATGAATTTGGTCATGATTATTATCCAAGTCTACCTCCACTGA
GCCACCAATCAGTACTTGCACTTGGATGGGCATGGCACCCAAAGAGACTT
GTACACTGACCTTCACTTGATTGCATTTAAAGAAATGTAAAGTTATAAAA
GCCAATCTGCTTGATTTTGTCTTCTGTGTCTGACTGTCTCCCTCTCTTGT
TATCCATCCCTTCCTCTTTCTCCCTCCCCCATATCACACACACTTTTTTT
TCTCACCCCCCCCCCTCGCATGTTTGACCACATTGGAAAGAAGAAAGCAT
TGTTTTAATATTAGACCATGCAAATAAAAATGCCCAATAAAAGTAAGAAT
CTGTGTAAATAATTTGTTCAGAAGGTGATTTTTTTTTGTCTTGGTTTGTT
TTCGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGCCTCGCCTATTTCATAT
CTTACCACTCCATCCGCTTCTCCCTCATTTTTACCACTTTTTCCTTCCCC
CTCACCCACTCCCCCACTTCTTTTCTCACCACCCCCTTTTATTTGTTTTT
TTTCTACCCACACTTTAACCTTACGCTACACTCTTATTACCTATTATAAA
ACCCCCCATTCATCCCTGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAATCAGCTATAAAGAAAAATGAA
ATTTTCAGGTAAATTGATGAAATAAGATATTATTATATTGAATGAGGAGA
CATATTCAGAAAGTCAAACTTTAAAGTTCTATGTTGTATATGGATCCAGA
AGCCATGGACTACTAGTCAAAAAGCCTAGCACCAAGCTTGGAACAGTAGC
CCTTAAGCGGTTAGTCAGGGTGGTTCAAGAGACTATCTCACATCGATACA
AGCTATTGTTGCTCTTGGTTGCCTGCAAGAACTTGAGGTTTAGTCCCTGT
TGCTAAGGATGGTACTGTGTTCTGTCCCCCCCCCCCACAGTTACCAATCT
GGCATTGATTTGAAGGCCTCCAATCTGATGGATAAAAACTCTGAGGGCTA
GCTTTCATAGTGCTGAAAGATGCTATGCAAGGCAGGTGAGGAAGAAAGTT
ACCATAGTCCAACCTTGTGGTAAGTCCTATGAACTTCAATAACGACTGAC
CTAGCACAATGTGCACAATGGGATAATAGGAGCGCTAATGTCTTGCAGGG
ATAACTTAAGAACCTCTGTTAAACTGATACGATATGTGAGTGCCTTCTAA
ATTCTTATTTTTATACCTATAGACTAGGGCCCCGCTCAGTTGTCAACACG
AAGCTTCCTGGACGGGATGAATGGACTTCTTCTTGCAGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_f11.b1 MSMg01no190_f11.b1 CHROMAT_FILE:
MSMg01no190_f11.b1 PHD_FILE: MSMg01no190_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:33 2005
         (310 letters)



>mm_chr1_81895404_81896113
          Length = 710

 Score =  582 bits (301), Expect = e-171
 Identities = 304/305 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctactatcataaatcccagacaagaaaatgccttcaccattaaggacaacaatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctactatcataaatcccagacaagaaaatgccttcaccattaaggacaacaatt 263

                                                                       
Query: 64  ttcttcctcaatgaatttggtcatgattattatccaagtctacctccactgagccaccaa 123
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 ttcttcctcaatgaatttggtcatgattattatccaagtccacctccactgagccaccaa 323

                                                                       
Query: 124 tcagtacttgcacttggatgggcatggcacccaaagagacttgtacactgaccttcactt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcagtacttgcacttggatgggcatggcacccaaagagacttgtacactgaccttcactt 383

                                                                       
Query: 184 gattgcatttaaagaaatgtaaagttataaaagccaatctgcttgattttgtcttctgtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gattgcatttaaagaaatgtaaagttataaaagccaatctgcttgattttgtcttctgtg 443

                                                                       
Query: 244 tctgactgtctccctctcttgttatccatcccttcctctttctccctcccccatatcaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctgactgtctccctctcttgttatccatcccttcctctttctccctcccccatatcaca 503

                
Query: 304 cacac 308
           |||||
Sbjct: 504 cacac 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)