GACCACAAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAG
AGGATCCGCGGAATTCATTGATTTACACAAAAACAAAATAGAATCATTCA
TCTCTAAGCTTGAATGTCCTTCTATATTTATAGCCATAATAACCCACAAG
TAAATATGACCTCTGAAATTATAACCAAGATAAAAATGAATCATGGAGAA
AATACTGGCATGAATGCTCATGATTCTGCACTAATCATTTTACACATAAA
TGAATATATCACCCTGCTTACAATGAGAATTTATCAACTACTAAAAATTT
TGTAGAACAGGAAAGAAATGTTTATTGAAAAAATGTCCAAGTGTATTTGT
CCATGGGTGGCAAAATGTATTATTCCTTACACACGCACATTTCATCTTAT
AATAAAAATGCACTTAATGAAATATCCTTGGGGAAAAAAAAATTAGGACA
ATGGGAGATATAAACAGCTTCAATACATGTATCCATATTGTCAGCATTCG
ACTTACTTCCAAAATACCAGAAAGAATGTCCCTCAAAAGCTATCTTATCA
CTCTGAGAATCCATCACTAGTACAGTAAGATGCTCCCAGGTTCTTGCTAA
GCCTATAGCATTGTACAGAACTCTGGAGAAAATAATCAAAATTTGAATAT
AACAAAAATAAATTCATGCATGAAGCAGTGGAGACAGACACCTTTTGTGT
GTAATTCTCAATACAGAGCAGTTCAGCTTCCACCAAGCAT

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATATAGCTTTCAGCTTTACTTTG
TAATGTGCTTAAATGATTTAAACATAATCAAAAATGCTTTCTTTCATAAG
AATGTAAAGCTAATGACTGACCTTTGTGAGTGGCCATATTTTTTCTTGAA
GAGCTCTTTATTTAAGGACTAACAAATCTTATTTTTCAATTGTCAATATC
TGACTGGATTATGATATATAACTGTGAGATAACTTCCTTAGTTTATTTTT
TAGGAAATAAGTGGTTTTTCAATTATCTATCTGATAATTAATGCCCTACA
ATATACTGATTATATGATTTACCATGCAAAAGCAATCAAATTTTATAATA
ATAAGAAAAAACTCTTCCATGATTATATGTAACAATATGGTAAAGGGATA
TCTATCATCTTTCCCACCTAATATATAAGAGGACCAAAGAACAGCCACAT
TGTATACCTTGGGTGACATCTCAACTCATAGGTGATCAAGCCAAGATTCA
ATGTAGGTGTCTTAGTTGGGGTACTGCTGGAAACAGGCACTATGACCAAG
GCAAGTCTTATAAAGGACAACATTTAATTGGGGCTGACTTACATGTTCCG
AGGTTCAGTCTAATCATCAAGGCAGGAACATGTAAACATCAAGGCAGATA
TGGTGCAGGCATAGCTGAAAG

Query= MSMg01no190_g01.b1 MSMg01no190_g01.b1 CHROMAT_FILE:
MSMg01no190_g01.b1 PHD_FILE: MSMg01no190_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:36 2005
         (296 letters)



>mm_chr1_68662744_68663439
          Length = 696

 Score =  572 bits (296), Expect = e-168
 Identities = 296/296 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggacaatgggagatataaacagcttcaatacatgtatccatattgtcagcattcgactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggacaatgggagatataaacagcttcaatacatgtatccatattgtcagcattcgactt 260

                                                                       
Query: 61  acttccaaaataccagaaagaatgtccctcaaaagctatcttatcactctgagaatccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttccaaaataccagaaagaatgtccctcaaaagctatcttatcactctgagaatccat 320

                                                                       
Query: 121 cactagtacagtaagatgctcccaggttcttgctaagcctatagcattgtacagaactct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactagtacagtaagatgctcccaggttcttgctaagcctatagcattgtacagaactct 380

                                                                       
Query: 181 ggagaaaataatcaaaatttgaatataacaaaaataaattcatgcatgaagcagtggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagaaaataatcaaaatttgaatataacaaaaataaattcatgcatgaagcagtggaga 440

                                                                   
Query: 241 cagacaccttttgtgtgtaattctcaatacagagcagttcagcttccaccaagcat 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagacaccttttgtgtgtaattctcaatacagagcagttcagcttccaccaagcat 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no190_g01.g1 MSMg01no190_g01.g1 CHROMAT_FILE:
MSMg01no190_g01.g1 PHD_FILE: MSMg01no190_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:36 2005
         (339 letters)



>mm_chr1_68761530_68762268
          Length = 739

 Score =  656 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagcaatcaaattttataataataagaaaaaactcttccatgattatatgtaacaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaagcaatcaaattttataataataagaaaaaactcttccatgattatatgtaacaatat 320

                                                                       
Query: 61  ggtaaagggatatctatcatctttcccacctaatatataagaggaccaaagaacagccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggtaaagggatatctatcatctttcccacctaatatataagaggaccaaagaacagccac 260

                                                                       
Query: 121 attgtataccttgggtgacatctcaactcataggtgatcaagccaagattcaatgtaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 attgtataccttgggtgacatctcaactcataggtgatcaagccaagattcaatgtaggt 200

                                                                       
Query: 181 gtcttagttggggtactgctggaaacaggcactatgaccaaggcaagtcttataaaggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gtcttagttggggtactgctggaaacaggcactatgaccaaggcaagtcttataaaggac 140

                                                                       
Query: 241 aacatttaattggggctgacttacatgttccgaggttcagtctaatcatcaaggcaggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 aacatttaattggggctgacttacatgttccgaggttcagtctaatcatcaaggcaggaa 80

                                                  
Query: 301 catgtaaacatcaaggcagatatggtgcaggcatagctg 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 79  catgtaaacatcaaggcagatatggtgcaggcatagctg 41


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)