Query= MSMg01no190_h03.b1 MSMg01no190_h03.b1 CHROMAT_FILE:
MSMg01no190_h03.b1 PHD_FILE: MSMg01no190_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:41 2005
(267 letters)
>mm_chr1_73281577_73282243
Length = 667
Score = 476 bits (246), Expect = e-139
Identities = 258/262 (98%)
Strand = Plus / Minus
Query: 5 gaattcctcacagctaagaccacattgcagcccaaaagaaggctgagactgcctggaagt 64
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 466 gaattcctcacagttaagaccacattgcagcccgtaagaaggctgagactgcctggaagt 407
Query: 65 gactcctcaaggatggcatgatgataccagaccctaagaatctaaactacgtagttagct 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gactcgtcaaggatggcatgatgataccagaccctaagaatctaaactacgtagttagct 347
Query: 125 gaacaccatctttaacaaagctgctttcttcttttcttgtgtggctttgactaaatggga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gaacaccatctttaacaaagctgctttcttcttttcttgtgtggctttgactaaatggga 287
Query: 185 agggccagacttgttcgttgctagtaccagtctgtagaatagttgttcagggtcttgtga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 agggccagacttgttcgttgctagtaccagtctgtagaatagttgttcagggtcttgtga 227
Query: 245 tctccttacattcctgagactc 266
||||||||||||||||||||||
Sbjct: 226 tctccttacattcctgagactc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space: 169764
Effective search space used: 169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no190_h03.g1 MSMg01no190_h03.g1 CHROMAT_FILE:
MSMg01no190_h03.g1 PHD_FILE: MSMg01no190_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:42 2005
(289 letters)
>mm_chr1_73208907_73209597
Length = 691
Score = 532 bits (275), Expect = e-155
Identities = 287/291 (98%), Gaps = 2/291 (0%)
Strand = Plus / Plus
Query: 1 tgtcctctaaggaggctggtttgactcagccctgct-ggggagccacagcccattcctca 59
|||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 201 tgtcctctaaggaggctggtttgactcagccctgctgggggagctacagcacattcctca 260
Query: 60 ttagcatttatgggttcattaccagcttcccagaaaaataccaacaaaggggctaagtcc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagcatttatgggttcattaccagcttcccagaaaaataccaacaaaggggctaagtcc 320
Query: 120 cttcagagcagacttctagagttttcttttgagaactcgtacacttcaagtgaagtttag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcagagcagacttctagagttttcttttgagaactcgtacacttcaagtgaagtttag 380
Query: 180 cttttaaaattcagacatggccaggcagccctccattttcctatttcaactgtttttgga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttaaaattcagacatggccaggcagccctccattttcctatttcaactgtttttgga 440
Query: 240 atgactttggggaagaactaatagtcctatacatttctgga-cacaatctc 289
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 atgactttggggaagaactaatagtcctatacatttctggaacacaatctc 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 691
Length adjustment: 9
Effective length of query: 280
Effective length of database: 682
Effective search space: 190960
Effective search space used: 190960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
