CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATGAACTACTGTGACCTAAGACTCTTAGGTCAAATTATCTAAATATCCTT
CAAGTATGATTAATTACAGTCAAGTTGTTTGCCTTCAAATGTAATATCTT
TCAATAATCAGACTTGTATTTCTATTTCTAATGTACCAACTGGTTCAGAA
TCTCAATAGGGAAGAGCTATTTGATTTCTTGACCTCCTAATGTGCCAGTA
CATACAATTTCTAAAGTGACTAAAAATTGGCAGATGAGCCAAAATAGAAC
TCAAATGTGTTTGTTAATCTTTTTGTTTTTCTTTTCAATAACTGAATACC
TAAGGTTATGTAACTTATACAGGAAGTGTATTTATATCTTACAATTTTGA
TGGCTGGGAATGTAAGATATCTGGTGAAGGACATCATGTTGCATCATAAT
GTAGCATAGGGCTTCATAAGGTGAGACAGAAAACATGTTCCTCGTTTTAT
ACAGCTATAGATGCCATCACAGGGCCCTTATCATCTCATTAAGTCCTAAT
TATGGATCATAGGCTCTACCTCAATGCCATCAACTCTGGGACTAAGTTTC
TAGCCCATGAACTTTTGCAGTAGATATTAAACCTTAATGCCAGATTTTCC
AATGGCATGCAAACATTTCATAAACCCATTCTATCATTATAAGTTGCCAC
TTTAAT

CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGATTCTTTTTCTTCCTGTGGAG
CTCCATTACCAAGCAGCGTTCCTCCAGTGTTTTTCTGTCATTCCTCAGAC
CCCACATTAGGCACCAAACTATTGGAAACCGACCTGTGTCTCACATGAAC
TGGGTTTCACCTGGGAGGCAAACTGGGGCTGAAAAGGGAAGGGAACTAGG
CGGATGAGAGAGAAATGGAACCAAGACAAGTTCCTGATCCAGGCTCAAAT
GTTTAATGGCGAATGCCCTTATAAAGGAGGGGGAGGCCTATTCCCGCCAA
TTCATTCTTGGAGTCTTTCTGCACGCGACCACCTGCAGGATAGGGTGTAG
TCTCAGGAATAGCTTGGTGACCTCCCAACAGGTAGCAGTATCTTGAAGAG
GAACAGCGCCAGTGGCTGAACAATAGAGTGATCTAGGAAGGCAGGCTCCA
CTCTAGGTAATCTCCTTAGTGGCAGCAAAGTTGAGGTCTGGCTCAGCCAG
CTTCAGGCTTGGGGGAGATTACAATTTATCAGCACTGAAAAATATAAGAC
CAGTTTTCTTCTCAGGAAATATTCAGCAAAATCCTAGTAAAGCCAGCTTT
ATTTTAAGTACAAGAAAGGACATGTTCATTCTGACACACAGAGAGCTGTC
CTTCCTATGTAGGAGCAACATGGGCAGAGAACAAGGAACTGT

Query= MSMg01no190_h11.b1 MSMg01no190_h11.b1 CHROMAT_FILE:
MSMg01no190_h11.b1 PHD_FILE: MSMg01no190_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:43 2005
         (662 letters)



>mm_chr1_53781727_53782788
          Length = 1062

 Score = 1216 bits (629), Expect = 0.0
 Identities = 650/657 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   aatgaactactgtgacctaagactcttaggtcaaattatctaaatatccttcaagtatga 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aatgaactactgtgacctaagactcttaggtcaaattatctaaatatccttcaagtatga 265

                                                                       
Query: 66  ttaattacagtcaagttgtttgccttcaaatgtaatatctttcaataatcagacttgtat 125
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttaattacagtcaagttgtttgtcttcaaatgtaatatctttcaataatcagacttgtat 325

                                                                       
Query: 126 ttctatttctaatgtaccaactggttcagaatctcaatagggaagagctatttgatttct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttctatttctaatgtaccaactggttcagaatctcaatagggaagagctatttgatttct 385

                                                                       
Query: 186 tgacctcctaatgtgccagtacatacaatttctaaagtgactaaaaattggcagatgagc 245
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgacctcctaatgtgccagtgcatacaatttctaaagtgactaaaaattggcagatgagc 445

                                                                       
Query: 246 caaaatagaactcaaatgtgtttgttaatctttttgtttttcttttcaataactgaatac 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caaaatagaactcaaatgtgtttgttaatctttttgtttttcttttcaataactgaatac 505

                                                                       
Query: 306 ctaaggttatgtaacttatacaggaagtgtatttatatcttacaattttgatggctggga 365
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctaaggctaggtaacttatacaggaagtgtatttatatcttacaattttgatggctggga 565

                                                                       
Query: 366 atgtaagatatctggtgaaggacatcatgttgcatcataatgtagcatagggcttcataa 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atgtaagatatctggtgaaggacatcatgttgcatcataatgtagcatagggcttcataa 625

                                                                       
Query: 426 ggtgagacagaaaacatgttcctcgttttatacagctatagatgccatcacagggccctt 485
           |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 626 ggtgagacagaaaacatgttcctcattttatacagctatagatgccatcacaaggccctt 685

                                                                       
Query: 486 atcatctcattaagtcctaattatggatcataggctctacctcaatgccatcaactctgg 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atcatctcattaagtcctaattatggatcataggctctacctcaatgccatcaactctgg 745

                                                                       
Query: 546 gactaagtttctagcccatgaacttttgcagtagatattaaaccttaatgccagattttc 605
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 746 gactaagtttctagcccatgaacttttgcagtagatattaaaccttaataccagattttc 805

                                                                    
Query: 606 caatggcatgcaaacatttcataaacccattctatcattataagttgccactttaat 662
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 caatggcatgcaaacatttcataaacccattctatcattataagttgccactttaat 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)