BAC Information

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BAC

Clone NameMSMg01-190M21
Chromosome1 (Build37)
Map Location 151,835,173 - 151,863,475
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042813, Pla2g4a
Downstream genePtgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534, EG545370
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190M21.T7 (MSMg01no190_m21.b1)MSMg01-190M21.TJ (MSMg01no190_m21.g1)
ACCAG381024AG381025
length761696
length of high quality
(start - end)		370 (392 - 761)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no190_m21.b1 PHD_FILE: MSMg01no190_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:12 2005CHROMAT_FILE: MSMg01no190_m21.g1 PHD_FILE: MSMg01no190_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,835,173 - 151,835,541)(151,863,193 - 151,863,475)
sequence
NNNGACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATCTTCAACCCCAAAGGAAGCTCAAGGCCAGGCTATA
CTATATAATATAGCTTCAAAAACTAATAACTTTAGTATGAAGGAATGAGA
TAACAATGGTGATTCCAAGAATTATTTGCTGAGGAGGTTTGGAGATTACA
TAGAGGCAGTGGCAGAGTGGAATAAATAGAGTAGTGATTCAAAATGAATG
GAGAGTGATATTCTAATTTATGTAAACACAGACTCTAGAGATCTCTTAGC
TCTCTTACAGTCTATTAATTAGGATGATTTTAAAAGAATCCTTTTAAAAA
CATAATATAAATGTTCCACAGAACTCTATATTAGCGCCTCGTGACTGAAT
CAGCATTTACCTTCTGAGACTGTGCTTCTAAGTTTGCTACAGTCAGACAT
CGTCAAAAGTTCCATCTGAGATCCAGATGTGATCATCTGAAATAAACTAT
GATTTCCTACTCACATTCCCACAAATAATCACTTAAGAGAGACCATTTCT
TTTCTGAGACTTGCAAATATTTACAGATACTTGTAAACTAGGAAGCCAGC
TGGGGTCCTACTTGCCATGAGCGTGAGAGTAATGCCACCATGAGGGTTCT
CAGTGACACAAACTCTATTTGCTTGGTTCACATCATTGAGAAATTCAAAT
CACTTACTCAAGGGTCTGTGACCTATCTGTGATTATGAAATTTCACTAGA
AAGTTACAAAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGAGGGACGAAAATCAAACAAA
AGAAAGGGGAGTAAAAACAAGTGCTCAGGATGTGGGAGGGGAACAGGAAA
GGACAGAAGGAAGAAGGGTAAGAAGAAGCAATAGAGAGGTAAGTATAATC
AAAGCATTTGCATGTGGAAATGCCACCGTGACTTTTAAAAAGACATTTAA
TGGAATTACTCACAATGAGCAGCTTACCGGACTTAAATTTCAAATATACG
AAAGAATGACAACCCTTGGAAAAATCTAGAGATACTATCATTCCAGTGTG
ATGCAGGAATTATTTACAGCCCCGCACACCGGAATAATACATATCCTGGA
CCGAAGACAGGAAAATGTGACTGTAGAACTACGTGGCCTTAGAAATAGAA
AAGGCCAGTCACAATAAACTTTTCCATGTCTTAACAGTAGTGGAAGAGAG
CCAGCGAGATGGCTCAGTGGGTACAAGTACTTGCTGCCAAGCCCTAAGAC
TTGAGTATTGTCCTCTGCTCTCCATTCAGAGTAAAGAAAGTAAGGGAAAG
AGGTAGTGGGTGCATAATTCATCTGGCTGAATGCTGTGTTCACAATTCAG
ATTTGATAAACTTAGTAAAGCCAGTTTCCCCTTCACATATTTACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_m21.b1 MSMg01no190_m21.b1 CHROMAT_FILE:
MSMg01no190_m21.b1 PHD_FILE: MSMg01no190_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:12 2005
         (370 letters)



>mm_chr1_151834973_151835742
          Length = 770

 Score =  683 bits (353), Expect = 0.0
 Identities = 365/369 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgactgaatcagcatttaccttctgagactgtgcttctaagtttgctacagtcagacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgactgaatcagcatttaccttctgagactgtgcttctaagtttgctacagtcagacatc 260

                                                                       
Query: 61  gtcaaaagttccatctgagatccagatgtgatcatctgaaataaactatgatttcctact 120
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 gtcaaaagttccagctgagatccagatgtgatcatctgaaataaactatgatttcctatt 320

                                                                       
Query: 121 cacattcccacaaataatcacttaagagagaccatttcttttctgagacttgcaaatatt 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacattcccacaaataatcacttgagagagaccatttcttttctgagacttgcaaatatt 380

                                                                       
Query: 181 tacagatacttgtaaactaggaagccagctggggtcctacttgccatgagcgtgagagta 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 tacagatacttgtaaactaggaagccagctgggggcctacttgccatgagcgtgagagta 440

                                                                       
Query: 241 atgccaccatgagggttctcagtgacacaaactctatttgcttggttcacatcattgaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgccaccatgagggttctcagtgacacaaactctatttgcttggttcacatcattgaga 500

                                                                       
Query: 301 aattcaaatcacttactcaagggtctgtgacctatctgtgattatgaaatttcactagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattcaaatcacttactcaagggtctgtgacctatctgtgattatgaaatttcactagaa 560

                    
Query: 361 agttacaaa 369
           |||||||||
Sbjct: 561 agttacaaa 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no190_m21.g1 MSMg01no190_m21.g1 CHROMAT_FILE:
MSMg01no190_m21.g1 PHD_FILE: MSMg01no190_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:12 2005
         (286 letters)



>mm_chr1_151862993_151863678
          Length = 686

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgagggacgaaaatcaaacaaaagaaaggggagtaaaaacaagtgctcaggatgtggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 attgagggacgaaaatcaaacaaaagaaaggggagtaaaaacaagtgctcaggatgtggg 424

                                                                       
Query: 61  aggggaacaggaaaggacagaaggaagaagggtaagaagaagcaatagagaggtaagtat 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aggggaacaggaaagcacagaaggaagaagggtaagaagaagcaatagagaggtaagtat 364

                                                                       
Query: 121 aatcaaagcatttgcatgtggaaatgccaccgtgacttttaaaaagacatttaatggaat 180
           |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 363 aatcaaagcatttgcatgtggaaatgccacagtgacttttaaaaagacttttaatggaat 304

                                                                       
Query: 181 tactcacaatgagcagcttaccggacttaaatttcaaatatacgaaagaatgacaaccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tactcacaatgagcagcttaccggacttaaatttcaaatatacgaaagaatgacaaccct 244

                                                      
Query: 241 tggaaaaatctagagatactatcattccagtgtgatgcaggaa 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tggaaaaatctagagatactatcattccagtgtgatgcaggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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