BAC Information

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BAC

Clone NameMSMg01-190P14
Chromosome1 (Build37)
Map Location 170,027,267 - 170,082,611
singlet/doubletdoublet
Overlap genePbx1
Upstream geneUck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190P14.T7 (MSMg01no190_p14.b1)MSMg01-190P14.TJ (MSMg01no190_p14.g1)
ACCAG381144AG381145
length739737
length of high quality
(start - end)
327 (45 - 371)293 (76 - 368)
definitionCHROMAT_FILE: MSMg01no190_p14.b1 PHD_FILE: MSMg01no190_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:24 2005CHROMAT_FILE: MSMg01no190_p14.g1 PHD_FILE: MSMg01no190_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,027,267 - 170,027,583)(170,082,321 - 170,082,611)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCTTATTGTTTTATAATATTCTGGGATTCTTTCCTGTTTTGTTA
GACAATGAGGTTCTTCCTTCAAATTGAAAACCAAGTACCACTGCTTTCCT
TGTGCAGTGGCTTCCGTGCTTATGGAGTTATTTTCTTAGCATAACTTTCT
AGAATATAGCTTAAGAATTTTTTGATACAGTAAGATTTTGTGAATTGCAA
GGTGTCACACTCCTCCATTATACCTATCACAAGCTGAAAATATTATAAGT
GAAGAAGTTTCCCTTAAATACACTAACCCACCAAAGACAGCGGCTGGGCT
ATTGGAATTTTTTTTTTTTTTTTTCCCCCCCCCCCCCAGATAAAGTGTTT
GGAGCAAAGCAAAGGTTTCATTGCTTATTGACAAACATCCAATACTCTGT
GTGGAGAAGAGTGGTTCAAAAGCTGGGAGACATTGTCTCTGAAGGCATTT
TGGTTTATACTGCATTTGAGGTATCCCTCCCAGTGTCCCCTCCTATCTTG
TTTTGAAGCGTCCTAAAGGTGTCTGTGTGGCCCTCTATATAAAAGGTCGG
GTCTCTCCAATTATATATATGTAAACAATTGCAACACGACTTTTTCCCCT
GCCTCAGAGTAACAAGGTAGTTGTAGTAACTAGGTCCTTTCTCCATGGTG
TATAATAACACGAACTTTATGTTGCCTTAAATTTGTCAC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGAAGCCATACAGAACTACAGGA
AGGAATAAGTCAAAAATGTGTAATGCCAAAAATACTAATCAAATATATTT
CCCGCTATGCAATAATTTAAGACATGTTCCAGTCATGGTACCTCTCCCAG
TATTGTGACCTAGGGATCCAGATCTTTGTTGCTCATCACCCACACATGTC
ATCTACCATACTTAGCCAGCAGGAAGAAGGGGTGTGAAGGAGGTTTACTC
ACTTCTTGAAAATCTTGATCAAGACTTGCATTTAGATTTCTAAGTCTAAG
GACTAGGGATAATAGTTTATTTCTACCCCCCACTCTCCCTAGCTAGGCAA
CCACTTCCTCATAGTAACGCCACATGATACCTTTTTAAATGACTGGCCAA
GTGACCAACAGTAAAAACAAAAGACGAATCTATATGCCTGTGTCATTGAG
TAGACACATGTCAAGTGAATATATGGCTAGCCACCATTCTAGACAAGGTT
ACATTATGCCTCAGTTGTAAAGGTTGATAAATGGGCATGGTATCATGTAA
GATATGCACCCCAATATTGTCCTTTCCAGGGACAGGAAACAGAAGTACTT
ATGCTATGAAAGTGTGAGAATGCCTAAGAGAAAATCAAACATGCAAACAG
GCTCTCCCAAATTTTCCAATGGAATCCAATGTCGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_p14.b1 MSMg01no190_p14.b1 CHROMAT_FILE:
MSMg01no190_p14.b1 PHD_FILE: MSMg01no190_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:24 2005
         (327 letters)



>mm_chr1_170027063_170027789
          Length = 727

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatcttattgttttataatattctgggattctttcctgttttgttagacaatga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcttattgttttataatattctgggattctttcctgttttgttagacaatga 264

                                                                       
Query: 65  ggttcttccttcaaattgaaaaccaagtaccactgctttccttgtgcagtggcttccgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggttcttccttcaaattgaaaaccaagtaccactgctttccttgtgcagtggcttccgtg 324

                                                                       
Query: 125 cttatggagttattttcttagcataactttctagaatatagcttaagaattttttgatac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttatggagttattttcttagcataactttctagaatatagcttaagaattttttgatac 384

                                                                       
Query: 185 agtaagattttgtgaattgcaaggtgtcacactcctccattatacctatcacaagctgaa 244
           |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 385 agtaagattttgtgaattgcaaggggtcacactcctcaattatacctatcacaagctgaa 444

                                                                       
Query: 245 aatattataagtgaagaagtttcccttaaatacactaacccaccaaagacagcggctggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatattataagtgaagaagtttcccttaaatacactaacccaccaaagacagcggctggg 504

                            
Query: 305 ctattggaatttttttt 321
           |||||||||||||||||
Sbjct: 505 ctattggaatttttttt 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no190_p14.g1 MSMg01no190_p14.g1 CHROMAT_FILE:
MSMg01no190_p14.g1 PHD_FILE: MSMg01no190_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:24 2005
         (293 letters)



>mm_chr1_170082121_170082813
          Length = 693

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaagccatacagaactacaggaaggaataagtcaaaaatgtgtaatgccaaaaatac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 491 actgaagccatacagaactacaggaaggaataagtcaaaaatgtgtgatgccaaaaatac 432

                                                                       
Query: 61  taatcaaatatatttcccgctatgcaataatttaagacatgttccagtcatggtacctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 taatcaaatatatttcccgctatgcaataatttaagacatgttccagtcatggtacctct 372

                                                                       
Query: 121 cccagtattgtgacctagggatccagatctttgttgctcatcacccacacatgtcatcta 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 371 cccagtattgtgacctagggatccagatctttgttgcttatcacccacacatgtcatcta 312

                                                                       
Query: 181 ccatacttagccagcaggaagaaggggtgtgaaggaggtttactcacttcttgaaaatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccatacttagccagcaggaagaaggggtgtgaaggaggtttactcacttcttgaaaatct 252

                                                              
Query: 241 tgatcaagacttgcatttagatttctaagtctaaggactagggataatagt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgatcaagacttgcatttagatttctaagtctaaggactagggataatagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)