BAC Information

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BAC

Clone NameMSMg01-191F16
Chromosome1 (Build37)
Map Location 124,139,707 - 124,139,987
singlet/doubletsinglet
Overlap genenone
Upstream geneInsig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18, LOC666971
Downstream geneLOC666983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191F16.T7 (MSMg01no191_f16.b1)MSMg01-191F16.TJ (MSMg01no191_f16.g1)
ACCAG381400AG381401
length740746
length of high quality
(start - end)
---282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no191_f16.b1 PHD_FILE: MSMg01no191_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:55 2005CHROMAT_FILE: MSMg01no191_f16.g1 PHD_FILE: MSMg01no191_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGAGAGCTCCCCTTAGATTCACAGATGAGTGTGGCTCCAAGCCT
TCATTAGAATAAACTTCTCTTCATGGCACATGAAGACAATCTCACAAATC
TCGATAGGAGAAGAGAATGACCATTAGGTTCCCAGTCTCTATTGATTAAT
CTATAACACAACCCCTATACCTAAGGGTCAAAGAACATTTCAAGAGAGTG
GCCTACAAGATTGTATGAGTCTGAGAAACAGGATGGCTGCTCATGAGACT
ATGTCATATGTGTGTGTGCGTGTGTGTGAGTGAGTGTGTXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTCCCCTTGCACGGTCAGAGAA
TCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGGCAAGACATTCAGACACTAA
TCTACAGGATTAGAAAAAATTTCTTCAGGGAATGGAATTATCTGTCTGCT
TTCTTAGCCAAGCAGCAGAGAGATCACTACTGTTGCGGCGTCATTTGTAT
TATGTGAGTTATTTAGTTTGTCACATATGCTCAGTGAGTACAAAAATCAG
TCAAGTGTAAAGTAAAGACAGACTGGTGTCTCTCATTCATTAATTTTCAC
AGCAGTTGGTTCTCTGCTGGCATTTAAAATTAACATAAGGCAAAGTTAAA
AAAAAAACCCTTTTTATCTTACCCTCCACCCCACATCACATATAACACTA
TGAATATCTAAAAATGCCAAAATTACTAATTGAACTGCATTAGTGCAAGA
TATTCACCCAGAAAAAGAGGAGTATTAAGTACTACACTTCTCAGCTTCTC
TAAGGACTGGACTTCTAGTATCTAAATATCCTTATAGTGTTAAGGATGGT
ATTCTATTTAATTCCATGAGGCATAAAAAAATGTCAGAACAGAGCTGAGC
GATGGCTCAGCTCAGAGTACTTGGTGCTCTTGCGGAGGACCTGGGATTGT
AGCTCCTCCATTGGGCTGCCTATAGCTACCTGTAATGCCAGTTCCACTGG
ATCCAGTGATCTCTTCTAGACTCTGTGAAACATCCCATATGTGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_f16.g1 MSMg01no191_f16.g1 CHROMAT_FILE:
MSMg01no191_f16.g1 PHD_FILE: MSMg01no191_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:55 2005
         (282 letters)



>mm_chr1_124139507_124140188
          Length = 682

 Score =  543 bits (281), Expect = e-159
 Identities = 281/281 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggcaagacattcagacactaatctacaggattagaaaaaatttcttcagggaatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 catggcaagacattcagacactaatctacaggattagaaaaaatttcttcagggaatgga 422

                                                                       
Query: 61  attatctgtctgctttcttagccaagcagcagagagatcactactgttgcggcgtcattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attatctgtctgctttcttagccaagcagcagagagatcactactgttgcggcgtcattt 362

                                                                       
Query: 121 gtattatgtgagttatttagtttgtcacatatgctcagtgagtacaaaaatcagtcaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtattatgtgagttatttagtttgtcacatatgctcagtgagtacaaaaatcagtcaagt 302

                                                                       
Query: 181 gtaaagtaaagacagactggtgtctctcattcattaattttcacagcagttggttctctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtaaagtaaagacagactggtgtctctcattcattaattttcacagcagttggttctctg 242

                                                    
Query: 241 ctggcatttaaaattaacataaggcaaagttaaaaaaaaaa 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctggcatttaaaattaacataaggcaaagttaaaaaaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)