BAC Information

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BAC

Clone NameMSMg01-191G06
Chromosome1 (Build37)
Map Location 159,699,706 - 159,699,964
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433368, Ralgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
Downstream gene6430517E21Rik, Astn1, Pappa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191G06.T7 (MSMg01no191_g06.b1)MSMg01-191G06.TJ (MSMg01no191_g06.g1)
ACCAG381424AG381425
length7931,085
length of high quality
(start - end)
262 (100 - 361)---
definitionCHROMAT_FILE: MSMg01no191_g06.b1 PHD_FILE: MSMg01no191_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:59 2005CHROMAT_FILE: MSMg01no191_g06.g1 PHD_FILE: MSMg01no191_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCCCCCTTTTTTCTCTCTTTTCTCTCTTTTTTACACANTTAAANAANN
NGTTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAATAAGTACAAAACGCCCTTTCCAAACATCACTTTTCTT
GAAGGTGAGATTTAGTTGATAAGTAATGTGTTGAATCTATGTCACAGAGA
AGTATATAGTTAATTTGTTTTTAAATTTTTAAATGCATTATCTATTTAAT
GTGTGTTTTTATGTTGCTTGAATGTATGGCACCAGTTTTTACTACAAAAC
ACAATACTGTTTTGTACTAAATGATTTTGCTGTTTTCATTTAATATTCAC
ATGTCTTAAAAAGAAGACCGTTTGATAATGAAACAGAAATTGGGAGACTG
CTGTGAATCTATTATTTATTACCCGCCCCCCCCATCTACTAACACCTCCT
TCTAATAGTCAAAACCCATCTATTTTATTCTATGATTCTTTGGGTTTTAA
TATAAAACGGTCCACCATGAGTTTGCATGCTAAATGCGAGCATCCTACGG
AGAGAATATAGGGTAGCCTTATGTGGTCCTCCTCCTTCTTCTCCTCTTTC
TCTTCCACCTCATCCTCTATCTGTACACCACGAGCCGAACCAGGACTCCC
CTTCTCACTTTTTTTTTCCCCCCATGATGCTCCTGCCCAACTTCATAGGT
CCCCTTTTACCTCGTAAACTACAACCCTTCTAAAATATGAAAGACCCAGT
TTAAATCCTTTCCTTCTGCGCGAATTTGTTATACAGTTCATAG
TCCCTTCTTTTTCTCTTCGTCTTCCTTTACCACCTTCACTTTTCTTTTTN
NTTTTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGGTGGTGGTGCCCGTT
GCCTCAACACTCCTCTTCTCCCCCCCTTCTTTTTCCCCTCATTTCTACCA
TATCCCAAACCATACTTTTATATACAAACTCATTTACCCTCCTCTCCTTT
ATACTATATACACCCCTACTCATTTATTCTCCTCTCCTCTCCTATATTTT
TCTCTCCTACACCACTCCCTTCTCCTCCTTTCCTCCCTCTTCCTATTTAT
TAACCCCCCTTCCCATTCCTCAAAATTTCCCCTCCCTTCTCCTACTTTTT
TCTCTCCCTCCCCCTACCCCCCCCCCTTTATATCATTCCCTTTTTTCTTC
TCCTATATCCTTATCCACTCTCCATACCCTCTATTTAATGTTTTTTTAAT
CAATTCCCCCCCCAGAACGAANCAACCCCCCATAAGAACAACAGATAATA
ACACTTAATACACACTTATCTTTTTACTCCCCCCCACCATCAAAACAAAA
AAAAAAAACCTTCTCCTCTATGCTGTTGTTCTCTCTTCCTCCCTTCTACT
TAATACTCTTCCCCTTTCTTACTCCANTCAACCCTTAATATCCTCCATTC
CCACTTAATCACTTTCCACTCCCTCTTCTTTCCACCCTTTACTACCTCTC
TTCCTTTTTACCCCCCCCCCCTTTTCCCACTTCTCCTCCTACCTATCACT
CTTATCATCTCATATTACTCCCACTCACCAGACCCGTTAAATAATTGTTA
CTCCTAATATATAATTCAGTTCTTACCTTTATCTACCCCGTACCTCTACA
CTCCTCAATTTAAATTTACTCCCTCCACTTTCATATATTAACCCACTCTC
ATATGAATAACTCCCCTAATTCTTCTCTTTACCATCTTTTATCTTCACCT
TCCTCACACCATCCACCATAAAACAACTCACTTTTATCATCTGTCCTTTC
TATACCACTCTTAATCTTCCCCTTCTCTATTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_g06.b1 MSMg01no191_g06.b1 CHROMAT_FILE:
MSMg01no191_g06.b1 PHD_FILE: MSMg01no191_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:59 2005
         (262 letters)



>mm_chr1_159699503_159700164
          Length = 662

 Score =  470 bits (243), Expect = e-137
 Identities = 255/259 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcaataagtacaaaacgccctttccaaacatcacttttcttgaaggtgagatt 63
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 462 ggaattctcaataagtacaaaacatcctttccaaacatcacttttcttgaaggtgagatt 403

                                                                       
Query: 64  tagttgataagtaatgtgttgaatctatgtcacagagaagtatatagttaatttgttttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tagttgataagtaatgtgttgaatctatgtcacagagaagtatatagttaatttgttttt 343

                                                                       
Query: 124 aaatttttaaatgcattatctatttaatgtgtgtttttatgttgcttgaatgtatggcac 183
           |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 342 aaatttttaagtgcattatctatttaatgtgtgtttttatgttccttgaatgtatggcac 283

                                                                       
Query: 184 cagtttttactacaaaacacaatactgttttgtactaaatgattttgctgttttcattta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 cagtttttactacaaaacacaatactgttttgtactaaatgattttgctgttttcattta 223

                              
Query: 244 atattcacatgtcttaaaa 262
           |||||||||||||||||||
Sbjct: 222 atattcacatgtcttaaaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space:   165209
Effective search space used:   165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)