BAC Information

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BAC

Clone NameMSMg01-191H01
Chromosome1 (Build37)
Map Location 3,385,789 - 3,386,071
singlet/doubletsinglet
Overlap geneXkr4
Upstream genenone
Downstream geneLOC100038975, LOC664792, LOC619785, Rp1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191H01.T7 (MSMg01no191_h01.b1)MSMg01-191H01.TJ (MSMg01no191_h01.g1)
ACCAG381456AG381457
length806734
length of high quality
(start - end)
233 (107 - 339)283 (78 - 360)
definitionCHROMAT_FILE: MSMg01no191_h01.b1 PHD_FILE: MSMg01no191_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:03 2005CHROMAT_FILE: MSMg01no191_h01.g1 PHD_FILE: MSMg01no191_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCACTTCCTCTTCTTCNNCNNNCGTTCGCAACCACATCACACCCACAA
AANNNGGATATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCAGCTGAGGAATACTGAATGGCTGAGAAGCACC
TGAAAAAATCCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTC
AGGTAACAGCAAATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCC
ACTGCTGGTGGAATTGCAAGCTTGTACAACCACTCTGGAAGCCAGTCTGG
AGGTTTCTCAGAACATTGGACATAATACTACTGGAAGATCCAGCAATACC
TCTCCTGGGCATATACCCTTTTTAAGCTCCCCCTCCCCCCCCTAACAACA
CATGCTCTACTATGTTGATTGCTGCCTTATTTAAAAAAAACAAAAACTGG
AAAGAACTCAGATGTTCCTCCACAGACGAATGAGTACAGAATACCCTGGC
CCTTTTATACGCTGGAGTATTAATATTTTACAAACAATGGACTTATTATC
TTTTCTGACCAATGGAGGCCTTCTGTCAGGATATCATTTCTTAACAGAGG
TAAACCCAATACACATAATTACCTCATTATCACTTCCGCACCTCTGCGTA
AAATACTGAACACTATCCCTCACCTAACCTTATATACACCCTTATAGACC
CCACTCTGCCACAAACCCCTGTTTAGTTATTCTCCTATATCAACTCAAAC
TTCTTT
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATTAAAGACACGCCATAGTTTG
AGTTCTCCCAAAATATCAAATGTCAGCATCAGCCAAATAAAACAGCCTCT
CTGGAGGTCTAGGATGAGGCAAGTTGAAAAAGGCATCTCTAGTAATGTCA
GGAAGATTTGCAGAATAACTCTTTACTAGCTGTATTCAGAATTTGCAAAC
TATTTACATTTTTTAAAGTATTTCACCATGGAAATAACAGCTAACAGGAA
GACAAAGCAAGTGTCTACTTCTGACTCTTATTTGAACTGTCCCTTTGTTC
TGGTGTCTAATTTTTTGAGCCCCCCCTCCTGTTTGGGAAAGGTGGATAAG
AATCTATATTGCCCACATGCTAAAAAGAAAGCTGTATGAAATGAATACAG
AGCTTTACAAAGATATGGTTCAATAGAAATGTTCTTTGCTGGGCCTCCAC
TTAGCCCAGCATCTTTTTAAGCATTCACAAAATAAACCATAGTTAAAAAT
AAAGATACTCTCTCATTGATACCAAATTACTTTTCTTTGCCTTGGCAACA
AAACATATAAGATTTCTAAGTTGAGAGAGCCACAAAGGAAGATAATTTGC
AATCAATAATAAGATGGGATAATGTAAGAGCTAAGATCTGACATACACCA
TACTCAGAGAAATTTAACTTTTCATTTACTCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_h01.g1 MSMg01no191_h01.g1 CHROMAT_FILE:
MSMg01no191_h01.g1 PHD_FILE: MSMg01no191_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:03 2005
         (283 letters)



>mm_chr1_3385589_3386271
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattaaagacacgccatagtttgagttctcccaaaatatcaaatgtcagcatcagccaaa 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 cattaaagacacgccatagtttgagttctcccaaaatagcaaatgtcagcatcagccaaa 260

                                                                       
Query: 61  taaaacagcctctctggaggtctaggatgaggcaagttgaaaaaggcatctctagtaatg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 taaaacagcctctctggaggtctaggatgaggcaagttgaaaaaggcatctctaataatg 320

                                                                       
Query: 121 tcaggaagatttgcagaataactctttactagctgtattcagaatttgcaaactatttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggaagatttgcagaataactctttactagctgtattcagaatttgcaaactatttac 380

                                                                       
Query: 181 attttttaaagtatttcaccatggaaataacagctaacaggaagacaaagcaagtgtcta 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttttttaagtatttcaccatggaaataacagctaacaggaagacaaagcaagtgtcta 440

                                                      
Query: 241 cttctgactcttatttgaactgtccctttgttctggtgtctaa 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttctgactcttatttgaactgtccctttgttctggtgtctaa 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)