BAC Information

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BAC

Clone NameMSMg01-191L17
Chromosome1 (Build37)
Map Location 75,291,171 - 75,291,358
singlet/doubletsinglet
Overlap genenone
Upstream geneArpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18
Downstream geneDnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191L17.T7 (MSMg01no191_l17.b1)MSMg01-191L17.TJ (MSMg01no191_l17.g1)
ACCAG381643
length716844
length of high quality
(start - end)
---188 (180 - 367)
definitionCHROMAT_FILE: MSMg01no191_l17.b1 PHD_FILE: MSMg01no191_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:27 2005CHROMAT_FILE: MSMg01no191_l17.g1 PHD_FILE: MSMg01no191_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXX
GCACCCCTCTTCACTCCCCTTTAATTTCCAGATCGTCATTACTTNTTTTN
CTGTCCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACACAACACAGAGAAAC
TCTGCACGTCCAGACCAAATTTAAACCCAAAATAAAAACAAAACCCACAA
ACAAAAAAAATTCCTGAGCCTTGGCAGGTAGGTAGAAGAGCAGGAATTGT
CAGGCTGGTTGGCACTGCTGTTGGTGGCACCCACTTGGGTGAGGAGGGTG
GTACTGAGCCAGGCCCAGGAAGACTGGATCAACGCATCTGATTCTGTCCC
CTGCTGCCAAGCACCTGGAGATGTTAAAAGTGTGATTGCGATTTTGTCAG
CTCCCACCATTTGAATGACTCTCCCAGATCTATNACCGTGTGGTGTGAAG
TATGGTGGGCGGCCCTAACTGAAAATAAAAAAAAAAAAAGGCAGGGGGTG
TTGTGTAATCCAATGTTTAAAATACGTATATGAGTTTGTCTATTAGTATA
AACGTTTGATGATGAAGTATTATATCGTTTTATAGGGTCGTACCCTGATG
AGCCACGTTAATTTGATAATCATTTACCCCCCCGCTTTTATTTTCATTAT
TTACCTTATTTCGACCGTTTCCGTTATTTCCCATTTATATCATCAATTGT
CTTTATTCTACTTTTATTCCCCGTTAGAATATTGTTTTCCCTAAGTATAT
ACTCATTATTTGAACTGTTAATTATTTTTATGCATTACCCTGTCACGTAT
TTGCCGACGTATCTCCCACATATCTTTATTCTACTCCCTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_l17.g1 MSMg01no191_l17.g1 CHROMAT_FILE:
MSMg01no191_l17.g1 PHD_FILE: MSMg01no191_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:27 2005
         (188 letters)



>mm_chr1_75290971_75291558
          Length = 588

 Score =  340 bits (176), Expect = 2e-98
 Identities = 185/188 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataaaaacaaaacccacaaacaaaaaaaattcctgagccttggcaggtaggtagaaga 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 388 aaataaaaacaaaacccacaaacaaaaaaaattcctgagccctggcaggtaggcagaaga 329

                                                                       
Query: 61  gcaggaattgtcaggctggttggcactgctgttggtggcacccacttgggtgaggagggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gcaggaattgtcaggctggttggcactgctgttggtggcacccacttgggtgaggagggt 269

                                                                       
Query: 121 ggtactgagccaggcccaggaagactggatcaacgcatctgattctgtcccctgctgcca 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 268 ggtactgagccaggcccaggaagactggagcaacgcatctgattctgtcccctgctgcca 209

                   
Query: 181 agcacctg 188
           ||||||||
Sbjct: 208 agcacctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)