BAC Information

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BAC

Clone NameMSMg01-191M23
Chromosome1 (Build37)
Map Location 90,111,743 - 90,112,036
singlet/doubletsinglet
Overlap geneUgt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Ugt1a1
Upstream geneEif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Dnajb3
Downstream geneLOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191M23.T7 (MSMg01no191_m23.b1)MSMg01-191M23.TJ (MSMg01no191_m23.g1)
ACCAG381691
length813725
length of high quality
(start - end)
---283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no191_m23.b1 PHD_FILE: MSMg01no191_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:33 2005CHROMAT_FILE: MSMg01no191_m23.g1 PHD_FILE: MSMg01no191_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATCCTTTTCCTTATATTCACACAATATNGGTGGAGTATTTCTAAATNN
NGGAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCCACAGCTTTATTCTGATGAAGTGTAATTTAATACCCTCCCGGA
CGAAAACCATTACGCGTGAAGCAGAACCCTTCACTCACGATTTGAAAGAC
AAAAAGGCCCTATAACACTCCCGCTTGGTTAATTTCGAAAGACCCAAACT
GCCCGGAAAACCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGACAGTAAGATGGTTCTGCA
TGGCTCCGTCATAGCTGTTTTGAGATCTCTGGTTCCAGAGTTAGGGGTCT
GGAAATCCTCTGACATCCTCCAATGTTGTTGTTGTTATTATTATTACTAT
TAGCATTAGTATTTTATTATTATATTTTTCAATTTCATTCAGGTACTCCT
ACACTATGGTCTATTTCACTCAGATTTCTCCTTTTCTCTAAGAAACTTCA
AAGTATTAGGGAGAAACTAGTTAAAAATAAGCATGGAACTCTTTTTCATA
CCAAATGATTTGGTTTTACCCCCCCCCCCACTTTTGGTTTGCTCTTCCTT
GGTTAGCTCTGGACATTCACTGAAAATGTTAAAAAAGTTTCCCTTTGCAG
TGAAGAAAAGTGAAGAGTTTCCCAGTGCCTGGCTTGGTGGCTTCTCACAC
TCAAATCACGAGGCTTCAGCATCAAGATACAGTGTTGTCTGAGCTCCAGG
GACTTCCTATGCACCAAACCTCCCACATGCAGAGGCCATAGGTGTTCTTT
CCAGATAACTGGCCTTTCTAGCTAGCATTGCAATTTGAAAAAAAAATCAC
ATTGTGTTCTTTTATTAAACATTGCGCTTTTTGCCCCTGTGAGGTCCTGT
GGCGCTCACCCGGAACTATATCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_m23.g1 MSMg01no191_m23.g1 CHROMAT_FILE:
MSMg01no191_m23.g1 PHD_FILE: MSMg01no191_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:33 2005
         (283 letters)



>mm_chr1_90111555_90112237
          Length = 683

 Score =  484 bits (250), Expect = e-141
 Identities = 278/294 (94%), Gaps = 12/294 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcagacagtaagatggttctgcatggctccgtcatagctgttttgagatctctggttcc 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 189 ctcagacggtaagatggttctgcatggctccgtcatagctgttttgagaactctggttcc 248

                                                                       
Query: 61  agagttaggggtctggaaatcctctgacatcctccaatgttgttgttg------ttatta 114
           ||||| ||||||||||||||||||||||||||||||||||||||||||      ||||||
Sbjct: 249 agagtcaggggtctggaaatcctctgacatcctccaatgttgttgttgttgttattatta 308

                                                                       
Query: 115 ttattact------attagcattagtattttattattatatttttcaatttcattcaggt 168
           ||||||||      |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 309 ttattactattagcattagcattagtatcttattattatatttttcaatttcattcaggt 368

                                                                       
Query: 169 actcctacactatggtctatttcactcagatttctccttttctctaagaaacttcaaagt 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 actcctacactatggtctatttcactcagatttctccttttctctaagaaacttcaaagt 428

                                                                 
Query: 229 attagggagaaactagttaaaaataagcatggaactctttttcataccaaatga 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 attagggagaaactagttaaaaataagcatggaactctttttcataccaaatga 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)