BAC Information

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BAC

Clone NameMSMg01-192G03
Chromosome1 (Build37)
Map Location 46,587,946 - 46,588,331
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
Downstream geneSlc39a10, EG227061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192G03.T7 (MSMg01no192_g03.b1)MSMg01-192G03.TJ (MSMg01no192_g03.g1)
ACCAG382079AG382080
length1,2891,240
length of high quality
(start - end)
429 (31 - 459)386 (70 - 455)
definitionCHROMAT_FILE: MSMg01no192_g03.b1 PHD_FILE: MSMg01no192_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:39 2005CHROMAT_FILE: MSMg01no192_g03.g1 PHD_FILE: MSMg01no192_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:39 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNGGCCACAGTGGNCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATT
ATGAAATTATTAGACAAATGGATGGATTTGGAGGATATCATCCTAAGTGA
GGTAACCCACATCACAAAAGAACACACATGATATGCACTCTCTGATAAGT
GGATATTAGACCAGAAGCTCAGAATACCCAAGACCCAATTTGCAAAACAC
GTGAAATTCAAGAAGATGGAAGACCAATGTGTGGATACTTTGTTCCTTCT
TAGAATGGGGAACAAAATACCCAGGGAAGGAGTTACAGAGACAAAGTTCA
AAGCAAAGACTGAAGGCATGACCATCCAGAAACTGCCCAGCTGGGGAATT
CATCCCACAAACAACCACCAAATCCAGACACTGTTGCAGATGCCAACAAG
AGCTTGCTGACAGGAGACAGATATAGTTGTCTCCTGAGAGGCTCTGCCAG
TGCCTGATTTATACACACGTGGATGCTTACAGTCATCCATTAGACCGAGC
ACAGGGTCCCTAATGAAGGAGTTAGTGAAATTACACAAGGAGCTGAAGAG
GTTTGCAGCCCCATAGGAGGAGGCAGGTTTAGTGCAGAGTTCTATCGACC
TTCAAAGAAGACCTAATTCCAGTTCTTCACAAACTATTCCACAAAATAGA
AACGGAAGGTACTCTACTCAACTGATTCTATGAAGCCACAATTACTCTGA
TACCTAAACCACAAAAAGACCCAACAAAGATAGAGAATTTCAGACCAATT
TCCCTTATGAATATCGATGCAAAAATCCTCAATAAAGTTCTTGCTAACCG
AATCCAAGAACACATCAAAACAATCATCCATCCTGACCAAGTAGGTTTCA
TCCCAGGGATGCAGGGATGGTTCAATATACAGAAATCCATCAATGTAATC
CATTATATAAACAAACTCTAAGACAAAAACCCCCTGAATCGCTCCTTATA
TGCTGAAAAAGGAATTTGTAAAAACCCACATTCCTTCTTGGATAAAAACT
TGGGAAAGATCAGAAATTCTAGGGCCCTACTCTAATTTGATTAAAGCATC
TTTCTTTAACCCTTTATCAACTTCTAAGTAATGGTGGAAATTGGGAATAA
TCCCCCCTATATCCGGGACAAAAAAGGCGGCTCTCTCGGTCCCTACCATT
TCAATTTTTTTGAATTCCCACCCGAAATTTCTACCCAAACGTATATGGGG
TATCATATTGTGTTGTAATAATCAAATATCTCTTCTCTTTTAATTTCATT
TATTATATCCTATTAATTTTCTTATACTTCTATTCTATA
NNNTTGTGATGCGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTGGCCCCTCTTATCAACCAACATGAAAGT
TTATTTCTACTGTTTTTGTGTTTGGCCTATTTGAGATACTTATAAACTAT
TTAATTATCTAAGTGGACATTCAGGACTCCCAGGGCTATACAGAGAAATC
CTGTCTCCAAAAAAGAAAACAAACAAACAAACAAACAAAAAACCAGGACT
CTTAATGTAAGAAAAATACAGTTTGTTTACACCGTAAACTATAATGAAAA
TTGCATTGTATGTGGTAAAGAATATAACTTTCCTCTTCCAGATTTTCTAA
TAAGCAAGCTGACTCTGACGTAGCAGTGTGGGAACACAGTGGCTCAGTGA
GAGACAATAATGGGTCCAATTTTAAAACAGCTGCACATGTATGAATACAC
AAATTCTAAACTCCACAGCAATGAAATGCTATTAAGTGTGTGCTTCTCTC
AGAGATTACAGGAGAGCTACCATGCAGATGACTGAATGGTGCAATGGGTG
AAAAATTGGCAGAGATAACAACTCCATCTTTAAAATAAAAGCTGAGGACC
ACAGGAACATATCCCCACCCACAGAGAACCACCCTACTGCTTCTCCTTGA
AGCATGACTAGAATTGTGAATTGCTTCTATTATTCTTTTACTTAATGTAA
CTCAACTGTTTTATCCATTAAAAAAAAAGTCTCACTTTGTTACCTAGACT
GGCTTCAGGCTTAAAATCCTGCTGCCTCAGCCACTCAAGTGATGGGAGCA
AGCATGTACCAGCATGCCTGGATGAATCTATTTCTTAAACTTGAATACTC
AATACAAACACACTCTTTTTTATTGGATCACTACATTATTTACCGATTTT
AATTGTACCTTGTCTGCTGCTGCATCCAACTGGTATTTTACACCGGGGCC
TTTTGCAGGTACCTTGGTTATCCTCAAGGCTCCAAAGAAAGAAAATTTTC
TCCTGGTTTAAATAAATTTCCTTTTCCCCCCAATGCGTCCTCCGAAAAAA
TATAAATACCACGGGGTTATTTTTTTAAAAAAAAACTCCGTGTCCCCAAA
ATTTTTAAAATATTTTATAGATTTTTCCCTTTCATTCTTAGGGGATCAAA
GACTCAAATTCTCCCCTTTCCTAATTCAATTTATTTTTTTTTTATTCTCG
GTGCTTTATAATATGCATTTTAACTTATCTTCTTGTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_g03.g1 MSMg01no192_g03.g1 CHROMAT_FILE:
MSMg01no192_g03.g1 PHD_FILE: MSMg01no192_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:39 2005
         (386 letters)



>mm_chr1_46587576_46588361
          Length = 786

 Score =  716 bits (370), Expect = 0.0
 Identities = 382/386 (98%), Gaps = 2/386 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggcccctcttatcaaccaacatgaaagtttatttctactgtttttgtgtttggccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 agtggcccctcttatcaaccaacatgaaagtttatttctactgtttttgtgtttggccta 697

                                                                       
Query: 61  tttgagatacttataaactatttaattatctaagtggacattcaggactcccagggctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tttgagatacttataaactatttaattatctaagtggacattcaggactcccagggctat 637

                                                                       
Query: 121 acagagaaatcctgtctccaaaaaag-aaaacaaacaaacaaacaaac-aaaaaaccagg 178
           |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 636 acagagaaatcctgtctccaaaaaagaaaaacaaacaaacaaacaaacaaaaaaaccagg 577

                                                                       
Query: 179 actcttaatgtaagaaaaatacagtttgtttacaccgtaaactataatgaaaattgcatt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 actcttaatgtaagaaaaatacagtttgtttacaccgtaaactataatgaaaattgcatt 517

                                                                       
Query: 239 gtatgtggtaaagaatataactttcctcttccagattttctaataagcaagctgactctg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtatgtggtaaagaatataactttcctcttccagattttctaataagcaagctgactctg 457

                                                                       
Query: 299 acgtagcagtgtgggaacacagtggctcagtgagagacaataatgggtccaattttaaaa 358
           || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 456 acatagcagtgtgggaacacagtggctcagtgagagacaataatggatccaattttaaaa 397

                                     
Query: 359 cagctgcacatgtatgaatacacaaa 384
           ||||||||||||||||||||||||||
Sbjct: 396 cagctgcacatgtatgaatacacaaa 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)