BAC Information

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BAC

Clone NameMSMg01-192G08
Chromosome1 (Build37)
Map Location 170,592,639 - 170,593,012
singlet/doubletsinglet
Overlap genenone
Upstream geneLmx1a, LOC100039879, Pbx1
Downstream geneEG383613, Nuf2, Rgs5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192G08.T7 (MSMg01no192_g08.b1)MSMg01-192G08.TJ (MSMg01no192_g08.g1)
ACCAG382086AG382087
length1,2981,300
length of high quality
(start - end)
425 (29 - 453)378 (76 - 453)
definitionCHROMAT_FILE: MSMg01no192_g08.b1 PHD_FILE: MSMg01no192_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:41 2005CHROMAT_FILE: MSMg01no192_g08.g1 PHD_FILE: MSMg01no192_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAACTATGGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCC
TAATATCAGAAAATAACATCTGGGACATTGCTACCAGTTATGGAGAAATG
CAGTGGATTATCAGAGATCATGGTAGACAATAACTCACCAAAATGTGAAT
AAGGTAGATAAAATGGACAATCTAAGAGACACAAAACCTACCGATAGAGA
ATCACAAGAGAAATAAATTTGAACAGATGTATGACTAAGGAGATTAAAGC
TATAAGAAAACATCTCCAAATCACAAATAACTCACACAAAATGTACTCAC
TGATAAGTGGATATTAGCTCAGAAACTTAGACTACCCAAGATACAAGATA
CAATTTGCAAAACACATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGA
CACTTGGCCCCTTCTTAGAATTGGGAACAAAACACCCATAGAAGGAGTTA
CTTATTTTTTAGTTCCCAGCTGAGACGAAAAGATGGACCATCTAGAGACT
ACCATATCCGGGGATCCATCCCATAATCAGCTTCCAAACACTGACACCAT
TGCATACACTAGCAAGATTTTACTGAAAGGACCCAGATATAGCTGTCTCT
TGTGAGACTACACTGGGGCCTAGCAAACACAGAAGTGGAGGCTCGCAGTC
AGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTAC
CCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAA
CTAAGCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGA
TGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACATGCAAACT
TTATATGCCCCAATACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTCGGT
GTTTAGGGGAACTCTTCCCTTTACTTTTATTTTCTTTTTTTTTTTCTTTT
TCATTTTTTTATAATTTCTCTCTTTTCTTTCTTTATTTCTTTCTCTGTCC
ATTTTTTTCTTCTTTTTTTCTTTTTTTTTTTATTTTTCCCTCTTCTATTT
TTGTCACATTATCCTTCTACATTTCTTTTTTTTATTTCTTCTTTTCTCTC
TCTTTTTATTCTTTTTTTTCTTCTTCTTCTTTTTCTTTCTTCTTTTTTTT
ATATCTTCTTCACTACATATTTTTTCATCATTCTAATTCATGCTTTTCCA
TCTCCTTCTCTTTATATTCTTCTTTGTTCTTCTCTATATTCATCTTATTC
ATTCTCTTATCCTTCTNGCTTTCCTTCTCCTTCCATATACTAATTCAA
NNTTGATCATGGTACCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCTAAATGAAGGGAGCAGGGAGG
GGGTCCTCCTGCTGGCAGAACGTTGAAAGCAAGATCCATGACATAGGCCT
GCGAGGAAGATTTTGCTCGGGAAATGCATGGGTTTCCGTATTCTGCACAC
CAAGCCTGTCTTCTAATGACAGCCTTGGGAGTCAGACATTTCTAAGTGCT
AATTAGAGGTGTTGATTATCGTGGTAACCCTGTGGGGGCTCAACCCAAGC
CTGAGAGCAAAAGCCACAGATATAATAAAGATTGTTACAGTGGCTCCCGG
TGTCACATGAACATCAATACTGGATTGTCAATGCTCAGGCGCAATCCAAT
CTGGGACTCCAGCTATTGCAATGACGGAGTCCCAGGGTGATACACGGGGT
TGTTTTTTCCCCCACCCCATGCAGTTCTGATGGAGGTACAAATAATTGGT
CCTAATCAATCAGGAGAAGAAGAAGAAAAAAAAACAAAAAAACAACTCAC
CAGAACTCAGATATACAGAGATTGACTTATGAGAGGATTTCACTAACACA
TGAGCAAAGGCTGTGGCGATGGGACACACAAAACCAACTTACGGCCAGAA
ATAAATGAGCTGCTTAGACGCTCGCAGTCTGCAGCGTCTCCATTTATGTC
CTGACTCACTTATGTTTTGCCATGCGCACATGTGACTTCTCTCGTGTATG
AGAAATTTGGGCTATTGATTTCTTCTCACTTTACATCCATATCCATTGAC
AGTTCATGACTACATTTGAAAAAAAGAGTGGTAATGAGAGACCGATGCCT
TGACAAAGAGTCTTAATTTGAGGGGTCGGTAGTAACATAAGAGCAGGCGT
TCTAGGCTCATAAGAAGTAATGACCAGCCCCTCTTATCTAAGTCTGGAAA
CTTTATTATCGCCCCCCCCCCTTAGTATAATATTTAGCCTCTTAATGGTT
CTCGCACTAAATGTATATAAGTGTTATCTCACGGTTGTATTGTCTCTACT
GTTTCACTTGAACTAACCTCTTAACCTCATTTGGCCTTTATTTTCTTCCC
TTGTGCGTTAATACATTACTCTTATATCTAATCCCTCCCTTTTCATTTTT
AAATATATATCGGGGATATCGTTTATTCTACTCCTCCTCTCTTTCTCTAT
TAATTCTCTTCTATATTTTCTATTCTATCTTCTCTTTTACTATCCTATAT
TCTGTCTGTCTGATTAAATCCGACGTCTNCCATACACCTTCTCTTTCCTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_g08.g1 MSMg01no192_g08.g1 CHROMAT_FILE:
MSMg01no192_g08.g1 PHD_FILE: MSMg01no192_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:41 2005
         (378 letters)



>mm_chr1_170592439_170593216
          Length = 778

 Score =  716 bits (370), Expect = 0.0
 Identities = 373/374 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctaaatgaagggagcagggagggggtcctcctgctggcagaacgttgaaagcaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttcctaaatgaagggagcagggagggggtcctcctgctggcagaacgttgaaagcaagat 515

                                                                       
Query: 61  ccatgacataggcctgcgaggaagattttgctcgggaaatgcatgggtttccgtattctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ccatgacataggcctgcgaggaagattttgctcgggaaatgcatgggtttccgtattctg 455

                                                                       
Query: 121 cacaccaagcctgtcttctaatgacagccttgggagtcagacatttctaagtgctaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cacaccaagcctgtcttctaatgacagccttgggagtcagacatttctaagtgctaatta 395

                                                                       
Query: 181 gaggtgttgattatcgtggtaaccctgtgggggctcaacccaagcctgagagcaaaagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gaggtgttgattatcgtggtaaccctgtgggggctcaacccaagcctgagagcaaaagcc 335

                                                                       
Query: 241 acagatataataaagattgttacagtggctcccggtgtcacatgaacatcaatactggat 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 acagataaaataaagattgttacagtggctcccggtgtcacatgaacatcaatactggat 275

                                                                       
Query: 301 tgtcaatgctcaggcgcaatccaatctgggactccagctattgcaatgacggagtcccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tgtcaatgctcaggcgcaatccaatctgggactccagctattgcaatgacggagtcccag 215

                         
Query: 361 ggtgatacacgggg 374
           ||||||||||||||
Sbjct: 214 ggtgatacacgggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)