BAC Information

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BAC

Clone NameMSMg01-192M01
Chromosome1 (Build37)
Map Location 124,846,220 - 124,953,819
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666971
Downstream geneLOC666983, Dpp10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192M01.T7 (MSMg01no192_m01.b1)MSMg01-192M01.TJ (MSMg01no192_m01.g1)
ACCAG382323AG382324
length1,2161,228
length of high quality
(start - end)		423 (33 - 455)395 (467 - 861)
definitionCHROMAT_FILE: MSMg01no192_m01.b1 PHD_FILE: MSMg01no192_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:34 2005CHROMAT_FILE: MSMg01no192_m01.g1 PHD_FILE: MSMg01no192_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,846,220 - 124,846,626)(124,953,425 - 124,953,819)
sequence
NNNGGGGCTCAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGA
ATTCTATCTCTCTGTAACTGTGAGCCAAGACAAACTCCATGTCTCCTGTA
AAGTTGCTTTTGGTCATTGGAATCTATCATAGCAACCAAAATATCACTAA
TACACACTAAACAGTATTCAGAAAAGATTTGGAGGCTTATCTGTTAATTT
ATAGCTCTGTTTTATAAACTGTAGAGCTCCCTCATTCTTATTCTCTGACC
AACACTTTTAGACTCCAAAAACTGTCTATAAGAGGAATTAATTTAGTTTT
GGAAAATGAGTTCCTAGACATTTGGCTGTGTTGTTTTAATGACTCAATTT
ATCATGGATGTGGGGGATTATGCCTAGTAACTTACAAGAACCTTTTCATT
CTATGCTCGTATTCATAGTAATTTGGAGTGAAGAACATCTGAAACAAGTT
GAAGTATCTCATTACTTCTTAGAATGAGAAAACTAAGCAGGCAGGATTCA
AACTTAGGCCATTCCCATAAAATAAATGATCCTTTCTCTGCATTGTTTCA
TGTTTCATGGCCACTCCTGAGATATTCATGCATTACTGTATGGATTTTTC
TCTGACAGGGCATGTGCTTTTGAACAGTATATATATGTGCCTATGTGTGA
AGGCTCAAAAGTGACTGTGGCATATGCTTTAATTGCTATCTATCTTATTT
ATCAAGGCAAGATTTCTATATGAAACTAGAAATTGTTAAACAGGCTAGCA
TAGCTAACCGGTTTATTCTGGGAATGTCATGTGCTGTTTCCTGAGTTCTC
AGATTAGAGGTGCCTTTGTTCTGGAGCCCATACCCAGGTTCCATTGCTTT
TGTTTGAGCTCTTTGCCCTCTGAAACCTCCCTGCTGCTACCTTACTAATT
TTTATAGAGGCATTTTTCTTGTTATAAAAAAATTTTGGTAATATTTTTTA
AAAGGAGCCTATTTTTTGATACCTACTGTTTATTTTAAATAAAAATATAA
TTTTTCTATATGTCTTTTTTATCCTAATTTTATGTGGTTGGATTTTATCC
CCTAATCCTACTTTTGTCTTTACTCTTCTTTATTTGTCTCTCTGTCCACA
AAATAAAAACTATTTGCTAATAATTATCTTTATCACACCCTCCCTTCTAG
TTGATATCGTTAACTACACCTTCCTTCTTTTTTCTCTTTTTATACTTCCT
CTAACTTATATTCCTG

NNNTTTTTCTGTGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATCCTGAGTGTTTACTACTTGAAACTTTG
ACAAGAAAACATGGCTGATATTTTGTGTTCAAGGTGTCAGTTTAAATAGC
AAACATGGTGAACAGCAGTTATGAGCAAGATACTGATTTCATATCATTAT
ATGGGTTAAATATGATTTTCAGACATGGAGTTTGCTTGTCTGTTCTTGAG
ATGTTCACAGTGTGGTGTGGTTGTCAGGCTCCCAGTGGAGTTATTTCTAA
GAATCAATGGTATGTGTCTGCAGAAGACTCCACACTATGCTAGCAGCTTA
GATCACTTATCCAGACCTTGGTAACATGCTTTTCGTAGAGATAATAACTA
AGTATCTGAAACATGAGGAGAATTAGGTTGGAGGAATTTCGGTGAAAGTT
CTTTGTGTCTGCCCGCAAGCAGAAAAGCACAATACCCCTCCTCACCAGCA
CTCTGTTGTCATCACAAACTGGGGAATGATGACTATAGTAATGGCTTTGT
AGAGTGAGTACATACTGAGTAAAGGCTTCATAAGCCTAGAGCTCAAGAAG
CGGGTTGGCTGACAAGTGGGTCTCAGGGATCTTCCTGTGTCTGCCTCCCA
GCAGTGAGATTACAGGCCTGCATCATGCTGTTTGGCCTTTTCATGTTGGT
TCTGTTAGGCTTCAAGGCAATCACTTACATACTAATCTATTTTCCAAACT
CAACACTGGTGCTACAGCTGAAATAACTATAGTAAAATTTGAGTTCAGGC
CATCTACAAACAAACAAATAAACAAACAAAACAATTGGAGTGTGACACCA
AGAGTACATGTTACGTAATTAAAACAAGGTAAATGCTCCCATGTAGAAAT
AATCATTTCTATTACATATTTCTACAGAAATATGGTAATGGACCCCAAAC
TTCTTAAAGCAATTGAAATTGTCTCCAATTTTCAAAGGGTGCGAAATCTG
CCTTTTAACAATTAATGTCAAAACGCTTTTCTGAAAATTTTTTAATTAAT
TAAATTTTTACACCCACCAAATTTTATTTCCCACCCCCCCCCTGGTCCCC
CCTCTTTAAATGGTTCCAATTTCCCCCACCCCCCTCCTCAACACCTTTTT
TTTTTTTTTGTTGTTCCTCCCCCTCCCCCCCCCTAATTCTTTATTCTCTT
GTGTTTCCATTATACCTCTCTTTTTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_m01.b1 MSMg01no192_m01.b1 CHROMAT_FILE:
MSMg01no192_m01.b1 PHD_FILE: MSMg01no192_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:34 2005
         (423 letters)



>mm_chr1_124846004_124846826
          Length = 823

 Score =  772 bits (399), Expect = 0.0
 Identities = 405/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattctatctctctgtaactgtgagccaagacaaactccatgtctcctgtaaagttgct 76
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaatgctatctctctgtaactgtgagccaagacaaactccatgtctcctgtaaagttgct 276

                                                                       
Query: 77  tttggtcattggaatctatcatagcaaccaaaatatcactaatacacactaaacagtatt 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tttggtcattggaatctatcatagcaaccaaaatatcactaatacacactaaacagtatt 336

                                                                       
Query: 137 cagaaaagatttggaggcttatctgttaatttatagctctgttttataaactgtagagct 196
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cagaaaagatttggaggtttatctgttaatttatagctctgttttataaactgtagagct 396

                                                                       
Query: 197 ccctcattcttattctctgaccaacacttttagactccaaaaactgtctataagaggaat 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ccctcattcttattctctgaccaacacttttagactccaaaaactgtctataagaggaat 456

                                                                       
Query: 257 taatttagttttggaaaatgagttcctagacatttggctgtgttgttttaatgactcaat 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 taatttagttttggaaaatgagttcctagacatttggctgtgttgttttaatgactcaat 516

                                                                       
Query: 317 ttatcatggatgtgggggattatgcctagtaacttacaagaaccttttcattctatgctc 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttatcatggatgtgggggattatgcctagtaacttacaagaaccttttcattctatgctc 576

                                                          
Query: 377 gtattcatagtaatttggagtgaagaacatctgaaacaagttgaagt 423
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gtattcatagtaatttggagtgaagaacatctgaaacaagttgaagt 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no192_m01.g1 MSMg01no192_m01.g1 CHROMAT_FILE:
MSMg01no192_m01.g1 PHD_FILE: MSMg01no192_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:34 2005
         (395 letters)



>mm_chr1_124953043_124953837
          Length = 795

 Score =  756 bits (391), Expect = 0.0
 Identities = 394/395 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcagaaaagcacaatacccctcctcaccagcactctgttgtcatcacaaactggggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aagcagaaaagcacaatacccctcctcaccagcactctgttgtcatcacaaactggggaa 718

                                                                       
Query: 61  tgatgactatagtaatggctttgtagagtgagtacatactgagtaaaggcttcataagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tgatgactatagtaatggctttgtagagtgagtacatactgagtaaaggcttcataagcc 658

                                                                       
Query: 121 tagagctcaagaagcgggttggctgacaagtgggtctcagggatcttcctgtgtctgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tagagctcaagaagcgggttggctgacaagtgggtctcagggatcttcctgtgtctgcct 598

                                                                       
Query: 181 cccagcagtgagattacaggcctgcatcatgctgtttggccttttcatgttggttctgtt 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cctagcagtgagattacaggcctgcatcatgctgtttggccttttcatgttggttctgtt 538

                                                                       
Query: 241 aggcttcaaggcaatcacttacatactaatctattttccaaactcaacactggtgctaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aggcttcaaggcaatcacttacatactaatctattttccaaactcaacactggtgctaca 478

                                                                       
Query: 301 gctgaaataactatagtaaaatttgagttcaggccatctacaaacaaacaaataaacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gctgaaataactatagtaaaatttgagttcaggccatctacaaacaaacaaataaacaaa 418

                                              
Query: 361 caaaacaattggagtgtgacaccaagagtacatgt 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 417 caaaacaattggagtgtgacaccaagagtacatgt 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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