BAC Information

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BAC

Clone NameMSMg01-192O10
Chromosome1 (Build37)
Map Location 3,092,473 - 3,092,853
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneXkr4, LOC100038975, LOC664792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192O10.T7 (MSMg01no192_o10.b1)MSMg01-192O10.TJ (MSMg01no192_o10.g1)
ACCAG382420AG382421
length1,2621,246
length of high quality
(start - end)
421 (30 - 450)380 (73 - 452)
definitionCHROMAT_FILE: MSMg01no192_o10.b1 PHD_FILE: MSMg01no192_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:55 2005CHROMAT_FILE: MSMg01no192_o10.g1 PHD_FILE: MSMg01no192_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCTGCATTCGCGCTAAGACTCACTAAGGGAGAGGATCCGCGGAATTC
CGGACACGATTGAGCTGATTTTGCAGAACTTGTGTGAGTAACCACTATAA
GGAACAAGGCACTGCACAGCTGATTCACAAATGCTCAAGTCTGAAAGGGA
GTAGCTGGCTTACATGCAGGCCATGGTGGCATGACGCTTCTCAAGGGTCT
GTCTGTAAAGCAGAGTGACAACCTAGACAGGGGACTGTGACATCAAACAA
GTGTTACAAAGAAAAGATGGCATCCCATGGAAAGCATGTCCTAGCCATTT
TCTGGAAAACTCAAGTCACATTGTTTAACTATGTATCCTCCCATCTCCTT
TTCCTGCTTTCTAATAACAATAATGTTGCTTATGTGAAAAAAACATGTTG
CTAGATTCCTTATGTGTTTCCTAGACTTACATGGTACTGCCTTGAGTCCT
TTTTTTTCACCCCCCCGAAAAGTGAAACCTGTATCCTAAAAAAAGATCCC
ATCTTTGTTGTTACTGTCTCCTGGTCTCCAGGCAGGACTGAAGCCCCTCC
CTGTCTCTGCCACACTATGACCTGATGTCTCCTACAGTAACCATGCAACT
GAATTGTGTCAGTGTTGCAACTGACCTTGGCACTGAGGGTTTCTCCTCTT
TGCTGAACTTTTATCCGCAGATCTTTGTCTTTACTGATGACTGTTACTAG
AATCAGTTTTTACTGTGATGGTAGCTAAATGGAATAGCTTATGGCTTTTC
AAGGAAAAAAAGTTATACCATTCTGACCCACCCAGTGTATAGTCAGTGGG
TTAAGTGCTCACAATGTTGTCACTACCATCTCTATCTATTTCTAGAACAT
TCCTATCATCCTCAAATGAAATTCCGTGCCTATGAAACAACAGATCTGTC
TTCTGTTCTTCCACACTCCCCAAAATCAAATCCAAAATTCCAATTTCAAG
CCCAAATTCCAATTTTCTTTTCATAAAAGATCCAATTCTGGGGACCTTCC
TTAAATATGGGAAAAACCAAACCTTTTTATGTGGATTTGTTGCCCCAACC
CAACAAATTGTGAGGGGTTTTTTCCTCTTTTTTAGGGACCCGCAAATTTC
CTATAAACTTTTAAAAATGATAAAAAATCCCCCACCACCCCACCACCTTT
ATAAAATTTATCACATTTTCCTACCACCGGCACCCGGGGCGGGGGGCCCT
CTTTTTTTTCTTTTAACAACGGCGGCTATAAACAGGGGGGCCCAACAAGG
TCTACGTCTTTT
NNCCCTTCATGGTAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTATGTAGACCATGCTGGCCTCGAACT
CAGAAATCTGCCTGCCTCTGCCTCCCAAGGGCTGGGATTAAAGGCGTGCG
CCACCACTGCCCGGCTTATTCACATATTTTGAAACACTGATATTAGATTT
ACATACAATGTGTTTGGGATTTCTCACGATTTACCATCTTATCATTTCAA
ATATTTCTTTCCCTTAGAACTTTGACCTCCTCTCTATCTGCTCTTGTAAT
TACCCAATTTCCATGTTTACTGTGAGCCTGCCATATCTGTTGCTACCTTT
TCACTTTCAATCTAAGCTTTCACATTGACTAGTCAATATATTTTTAATTT
TCTATTTCTTTGTATTAGCTTTTTAGGAAAGTCTATAATTGTTATTGTTA
TTTTTTTTGCCCCCCCAGNCCACTTTTAATTCACCAAAAACAGAAAGGAG
GCCTCAACTGCTGGCCATACAAGTGGAATGGAATCAATTTATCTTCCTGT
CCTGAATTAAAACTTGTTCAAAGTATATAAAAACCATGGCTTTCTTTTAT
GTTTCCAAAGGCTTGTCTCATGCTTTATTCCCAGTTTAATATTCACAGTG
AAAACTAAGCCTTGGAGTTGCTGACTTTAACATGAGGCAAGCCCTAATTA
ATGTGGACAGAGTATTTTATATTTTTGCTACTCAATATTTATATTTTGTG
TGTCATCCTTGTGCAGGGCCCATGCTAATCTTCCCTGTATCGTTCAAAAT
TTAATGTATGTGTTGCCGAACCAAGCACTCCACTTTTATTTTTTAATGCC
AGAAACTTGATCTGAATCCATTTTAGTTTAACTTGTCAAAAATTATAAAC
TCTTTTTATATTTCTAAAACTATAGTTTTTATTTCTTTGGTACCCACAAA
TATATCTTCGTCTTATTATTTTCTCCCTTTTTTTTCTCCATATTCTTTTT
TAAATATCATTTTTTCTCCTCATATTATTTATTTTATTTGTCTCCCCTCA
TACTTATTTCCTCTTTTCTTCTTTTTTCATATCTATCTATTATTCTCTTT
TTCTTCATCTTCTGCTTTCTATCATCTAATCTTGCCTCCCTTTCTTTTAC
TATTCTTNCTTTCCTTTCCATTTTCTCCCTACCGTCTTCTTTACTTTCTN
TTCTCACTTCTTTATATCAAACTCCTTATACCTTCCCCCTCTCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_o10.g1 MSMg01no192_o10.g1 CHROMAT_FILE:
MSMg01no192_o10.g1 PHD_FILE: MSMg01no192_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:55 2005
         (380 letters)



>mm_chr1_3092170_3092954
          Length = 785

 Score =  690 bits (357), Expect = 0.0
 Identities = 373/381 (97%), Gaps = 5/381 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   tgtagaccatgctggcctcgaactcagaaatctgcctgcctctgcctcccaagggctggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 684 tgtagaccatgctggcctcgaactcagaaatctgcctgcctctgcctcccaagtgctggg 625

                                                                       
Query: 65  attaaaggcgtgcgccaccactgcccggcttattcacatattttgaaacactgatattag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attaaaggcgtgcgccaccactgcccggcttattcacatattttgaaacactgatattag 565

                                                                       
Query: 125 atttacatacaatgtgtttgggatttctcacgatttaccatcttatcatttcaaatattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atttacatacaatgtgtttgggatttctcacgatttaccatcttatcatttcaaatattt 505

                                                                       
Query: 185 ctttcccttagaactt-----tgacctcctctctatctgctcttgtaattacccaatttc 239
           ||||||||||||||||     | |||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctttcccttagaacttagtcattacctcctctctatctgctcttgtaattacccaatttc 445

                                                                       
Query: 240 catgtttactgtgagcctgccatatctgttgctaccttttcactttcaatctaagctttc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catgtttactgtgagcctgccatatctgttgctaccttttcactttcaatctaagctttc 385

                                                                       
Query: 300 acattgactagtcaatatatttttaattttctatttctttgtattagctttttaggaaag 359
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acgttgactagtcaatatatttttaattttctatttctttgtattagctttttaggaaag 325

                                
Query: 360 tctataattgttattgttatt 380
           |||||||||||||||||||||
Sbjct: 324 tctataattgttattgttatt 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 785
Length adjustment: 9
Effective length of query: 371
Effective length of database: 776
Effective search space:   287896
Effective search space used:   287896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)