BAC Information

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BAC

Clone NameMSMg01-192P01
Chromosome1 (Build37)
Map Location 168,186,391 - 168,186,795
singlet/doubletsinglet
Overlap geneLOC100039795
Upstream geneGpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael
Downstream geneTada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192P01.T7 (MSMg01no192_p01.b1)MSMg01-192P01.TJ (MSMg01no192_p01.g1)
ACCAG382447AG382448
length1,1911,168
length of high quality
(start - end)
421 (28 - 448)379 (70 - 448)
definitionCHROMAT_FILE: MSMg01no192_p01.b1 PHD_FILE: MSMg01no192_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:01 2005CHROMAT_FILE: MSMg01no192_p01.g1 PHD_FILE: MSMg01no192_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCATTGGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCA
TTGATTGAGCTGGATGGGAATGCCTTACCTTTCCTCGTAGGGCTACTGTG
TGAGGAATGAGTCTAAAGCCCTCTCATCCTTGACTGATCCCCTCTCCTCA
GCCCCCACCCCTTTTCCCGGCAGCCATTGTTAGCGCCCTCATACTTTGCA
GGGGCTGAGAGGAGCCTTGTCCATCAGCATCTCTGACAGCAGGGGGGCAG
GTCAGGGGGCGGCAGCGGGTAGTCAATGGCACCCCAGGACGCAGCCTCCC
TCACACATCACCCCTGCCATCTGACAGCTGAGACACCCTGATAAGTAACC
TGTTGCCTGTTTCCAGGCAGAGCCAGCTCTCCAGGTGCAGAAGGCAGAAG
GCACAGACAATGCAGCGCCTCCCTCCACACAAAAATAAAGCAACAGAGTT
TTTCCCCACCCCCACCCCCGAAAGCCAGAGAAGCAGATAAAGATGGGGCA
CAGAACTCTGGCTGGGGTCTAAGGTGATACCCCAGATTCAAATATGCATA
CTGCTTCTCTTCACCTCTGTTTCTATAAACCAAGAGGAGTGGGGGCCGAA
CTAGATTTCCTGTGGTCCCTCCACTAATAGGTTTACATTTCATAAGAAAC
TGTTAGCCATCTAGAGCCCATATGCTGCTCCTCTCCCACTCTCTGTGAGT
CCCCAGAGTACTCCTCTTGGGCAAACCCAGTATTGGGAGAGGGACGTCAA
GAAAAGCATCTCTGACTCATGGACCTCCTAAGATGCCTGCCTGACTTCAG
AGAAGCCATGACACAGGCCTCAAGTCCCAGGCCCCTTGAAGATGGCAAGT
GAGCAGTAGAGGCCACTCGGGAGTCAGGATCTGTGAAGGTGGCAATGGAA
AGCATTGGGAGGCCAGAAGAGGTAGAACCAGGGATCAGCCCAACCCCAAA
ATTAAATGATTCCCATTTGAATAAAGGGGGAGGGAAAAAATTCCTAACTC
CCCCCCATAATAAGGTTATCTCTTACTTGGGGAGTGGAGTTCTACTCCTC
TCCCCAATTTTTTTTCCAATTTTGGTTGTAAAAAAATCACTTTAGCTCTT
CTTTTTTTTCTCGGTTTACACAAACTCAAGCACCCATCAAATTCACTCCT
CTCTCTCAAAAAAATACAGCCTGTATTTCTGTCTTTCTTCC
NNCCTCACAAGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTCGACTTAAGGTAAAAGGGACGATGTACT
AGATAGTAATTGTTGTGTCCGGCCAGCAGACCACAACCTGGGTTCTAGCC
TGGAAAGGCATTTTGGAAACCTGGAAGAGAAGAGGGGCTAGGTGGCGAGA
GAAAAGAATGTAGCCAAGACAGTTACTCTGATCAAGGCTCAAATTTTATT
GTTGCGACACTAGTTATGAAGGAAGGGGGAGGGGACCCGATTCCCGCCGA
ATAATCTCTGGTCCAGTAGAAAGGTGCACGTGTGTGGCTCCTCAGGTTCC
AGCAGTGGGCGTGGCAGAACGAATGAGCAGGAAGCTCCACCCCTGAGCAA
GCAGGTTTCAGGCTGGGGGAGGGGAGACTACAAGTAATAGATACGATATT
TTTTCCCCCCCCCCTCCAGTTTTGCTGGTATGTTTCTGAAATACCAGTTT
TATTTTATTTTATTTTTTTTATTATTATTTTTTTTACTCATGAGAAGTTG
TTTGTTTATCTTAGTTATTAAACTTAAGATTGATATAAAAAATTTCATTT
TCTGAATAACCATTAAATATGAAACCAAAAAAAATTACAGGTTTCCTAAG
ATGTGCAACCAAAAAAAAAAGTGTTCTTTTAATACAAATCTTCTTCATCT
CTCATCATTCCTACCAAAATAATTGTCCCAGAATTTTATTTGNGTTCTTT
TTTTTTTCAGCTTTTTTTTATTAGGTATTTTCCTCATTTACATTTTTCAC
TGCTATCCCAAAGGTCCCCAATATCTTACCCCCTTAATTCTTTTATCATC
TCTTTTTTTTTTATTGTTCCATTTCTTTCCCTTCTTCGCTCTTCTTAATA
CTCTCTCACATCTACTTTTCTCCTCTTTTATTTTCTGTATTTTTTCTATT
TTCTCTCATCTCTTATTCTTCTCTTTATTAAATTATCTCTCTTTCTTTCA
TTTTTTTTTCTACTCATTGTTCATCTTCTACCTCTCTCTTTCTTCTTCTC
TTTTTTCTACCTTCTCTTTCATCTTTCTTTTAACCTTTTTTTTTCACTTT
CTTCTCATTTCTCCTTTCTTAATCTATTATCTACTGTTTCTTTCCTCTAT
CTTCTTCCCCTTCACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_p01.b1 MSMg01no192_p01.b1 CHROMAT_FILE:
MSMg01no192_p01.b1 PHD_FILE: MSMg01no192_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:01 2005
         (421 letters)



>mm_chr1_168186175_168186995
          Length = 821

 Score =  775 bits (401), Expect = 0.0
 Identities = 404/405 (99%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattcattgattgagctggatgggaatgccttacctttcctcgtagggctactgtgtga 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaattcattgattgagctggatgggaatgccttacctttcctcgtagggctactgtgtga 562

                                                                       
Query: 77  ggaatgagtctaaagccctctcatccttgactgatcccctctcctcagcccccacccctt 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaatgagtctaaagccctctcatccttgactgatcccctctcctcagcccccacccctt 502

                                                                       
Query: 137 ttcccggcagccattgttagcgccctcatactttgcaggggctgagaggagccttgtcca 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcccggcagccattgttagcgccctcatactttgcaggggctgagaggagccttgtcca 442

                                                                       
Query: 197 tcagcatctctgacagcaggggggcaggtcagggggcggcagcgggtagtcaatggcacc 256
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagcatctctgacagcagggaggcaggtcagggggcggcagcgggtagtcaatggcacc 382

                                                                       
Query: 257 ccaggacgcagcctccctcacacatcacccctgccatctgacagctgagacaccctgata 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggacgcagcctccctcacacatcacccctgccatctgacagctgagacaccctgata 322

                                                                       
Query: 317 agtaacctgttgcctgtttccaggcagagccagctctccaggtgcagaaggcagaaggca 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaacctgttgcctgtttccaggcagagccagctctccaggtgcagaaggcagaaggca 262

                                                        
Query: 377 cagacaatgcagcgcctccctccacacaaaaataaagcaacagag 421
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagacaatgcagcgcctccctccacacaaaaataaagcaacagag 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)