BAC Information

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BAC

Clone NameMSMg01-192P12
Chromosome1 (Build37)
Map Location 134,458,445 - 134,458,822
singlet/doubletsinglet
Overlap genenone
Upstream geneAvpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2
Downstream geneNfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192P12.T7 (MSMg01no192_p12.b1)MSMg01-192P12.TJ (MSMg01no192_p12.g1)
ACCAG382466AG382467
length1,2411,236
length of high quality
(start - end)
419 (28 - 446)378 (71 - 448)
definitionCHROMAT_FILE: MSMg01no192_p12.b1 PHD_FILE: MSMg01no192_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:06 2005CHROMAT_FILE: MSMg01no192_p12.g1 PHD_FILE: MSMg01no192_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGTCTATGGGCGCTATAGACTCCTTAGGGAGAGGATCCGCGGAATTCA
TTTGCCATGGTTTTGTTTGTTTGTTTGTTTTAAATGTACTCACTGTCTTT
TTCTAAGAATCAAGGGGCTAATTCTGATTTATGAGATAATCAAAAGGGAA
TCTGGAGTAAATGACTGAATTGATATGTAACCAAAAGACTGGGTTTGGTC
TGTAAGAGAGAGTTACCCAGAGAGAATTGCTTGGAGAGCTAACACAGCTC
CTTTAGAATTTTTCTAGCAGGATTTCTGATTTTTGTTGGAAAATCCAAGA
ATTTTTTCTAGCAGTTTTTCTGACTTTGGTCGGAAAACCTGTGAGCTATC
CAGAGAGCTTTTAGAATTTTTTTCTACCATGAAAGAGCTGTGTCTAGGAG
AACTGTCTCAAGCAGAAAGCTATCTCTAGCAGACTACAGAGCCAATATTT
TATCTACCCAGAACTGTCTAGGGAACTACCTCAAACAGACTGTTATCTTG
CACCACATCATTTGACTTCAAGTCATTTCTTTCACTGTTCCCAAACACAC
CTTCCTCAGGACTGCCTCTCCAAGCTGAAGCTGGTCCTTGGCTAGAAATC
TACCTTTAGGGGCTCATAAAATGGTTCAGTGTTTGCTCCTCTTGAAGAGG
ATCCAAGTTTAGTTTCCAGCATCTACATGGCAGCTCACAATCACCTGTAA
CTTCAATCCAAGGGGATCTTCCCTCTTCTGGCCTCTATGGGCACCAAGAA
CACACATCATGCACATACAAACAGGAAAGACATATGCAGGGTATAGTGTC
CCATGCCTTTATTCCCAGCACTTGGGAGGCAAAGGCAGGTAGATCTCTCC
CTGAGTTCGAGGCCCGCTTGGTCTACGTAGTGAGTTCCAGAATAGCCAGC
CCGAGCTAGATTTGAGGCCCCGTTTCTAAAATATAAACAACCCCCCCCTT
TATCCAACCAAAACCCCAAAATTAATCAAACAGGGTCTAAAATATTAAAA
TTTAAATTTAAAAAACCCCCTTTTATTAATGGTAAAGGGCCCCCTTTAAA
AAAAAACCTTTGCTTGTAGTTGGTAAAAAAGTTTTTTAAACCCCACCCCC
CAACTCCTCTCTCTTTGGGTTTAAACCCCCCATGTTGCTAAATATTTGTC
CCCCCGCCGTTAACAAAAAAAGACTCTCCTAAAAAACACTCTTTTAGTCT
CCACGTGTCCGTACTGGTAAAACTTTTGTGTGCTTTTTTTC
NNGGCAGAGGGNAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTGCAATAAACTCAAGAAGGCATCCTGAC
TGTAAAGAGCCAGCAACAGCCAGAACATGGGGTGATTTCACTCTCAGACA
AAGATTCCCAGTACGGATTTAAAAGCACCTAGAGTCGACTGGGAGCTGAC
AAATGGCAAGTGTGGGACGAGGGAGGTGGGTGATAGAGTCCTGATTAATA
CAAGGGAGATTGGAGGCTTCTAGGCAGTCTGGAGGAATCATTGGAGTAGT
TGAGACAGGCAGGGGAAGGATCAGAGCAATGCTGTCTACCTACGTGTGGT
TCTCCACCCAGCTATACCAGACTCTCTTGGAAGTGGGAGCTAGTAAAATT
TCCCAGGTCTAGTATCTGAGCTCTGGTGCTTGCTATGAGAACTTTCCCCT
TGTTTCTCCCCCCCCGATACTGGCTGCTGCTTGAAAAAAAAGGAAGAGGG
AGAAGCCACCACCTCTTGTGCCCTCTGTATAGTCACCCTACTTCAGTCAT
GAATTTGCCCTGGGTGAGTAGAAATTTTTAGCAAAATTGGTGAGTTCAAT
ATCTGGATAGAGAGGCAGGTTGAGAATGGGGAATCTGAATTGGAGCCCTC
AAGAGCAACCCCCCAAAAAATGTGGGCAGGGCTTTGACTTTCTCAAGCCT
TGCAACTTGCAGGGAATTGAGCCACCTATAATACTGATGGCATAAAGGGC
AAAGGGCACCAGATGGTCTTTGGGGGACAGTACAGTCACAGTAAGAGAAG
GGGATGCTGCCAGCTACCACCGTGAAGTGGGCTTTATGTGAAAAGTCCCT
GTTCTTTTGTTTTCTTACGGGTTGGGAAACAAAATCCGGCCCCTCACATG
TCTAGGAAACCCTCTAAAGCCTACCTTGTATTACTCCACCTTATAGGTCT
TCTCCCTTTTACTTTTCTTCCGCCCTTTGACCTAGCCTTCTTTTTTTTTA
TTATCTTTTGATAATCTGTCTCCAACTCTATAAATTTTCTTCCCTCCCTC
TCGTCACTTCTTCATCCTCATTCTCTCTCTTCTCCTCCACATCTGTCTTC
TCTTATCTTACCCTTTCTGCTCCCTTCTCTCTCTCTCTTTTATTTCTTAC
TTTACTTTATATTCCTTTCTCCTCTTTTTCCTCCCTCTTCTCATCCCTAT
CTCACTATCTCTCTTCTTCTATACTCTCATCCGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_p12.g1 MSMg01no192_p12.g1 CHROMAT_FILE:
MSMg01no192_p12.g1 PHD_FILE: MSMg01no192_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:06 2005
         (378 letters)



>mm_chr1_134458245_134459022
          Length = 778

 Score =  723 bits (374), Expect = 0.0
 Identities = 377/378 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgcaataaactcaagaaggcatcctgactgtaaagagccagcaacagccagaacatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 actgcaataaactcaagaaggcatcctgactgtaaagagccagcaacagccagaacatgg 519

                                                                       
Query: 61  ggtgatttcactctcagacaaagattcccagtacggatttaaaagcacctagagtcgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggtgatttcactctcagacaaagattcccagtacggatttaaaagcacctagagtcgact 459

                                                                       
Query: 121 gggagctgacaaatggcaagtgtgggacgagggaggtgggtgatagagtcctgattaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gggagctgacaaatggcaagtgtgggacgagggaggtgggtgatagagtcctgattaata 399

                                                                       
Query: 181 caagggagattggaggcttctaggcagtctggaggaatcattggagtagttgagacaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 caagggagattggaggcttctaggcagtctggaggaatcattggagtagttgagacaggc 339

                                                                       
Query: 241 aggggaaggatcagagcaatgctgtctacctacgtgtggttctccacccagctataccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aggggaaggatcagagcaatgctgtctacctacgtgtggttctccacccagctataccag 279

                                                                       
Query: 301 actctcttggaagtgggagctagtaaaatttcccaggtctagtatctgagctctggtgct 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 278 actctcttggaagtgggagctagtaaaaattcccaggtctagtatctgagctctggtgct 219

                             
Query: 361 tgctatgagaactttccc 378
           ||||||||||||||||||
Sbjct: 218 tgctatgagaactttccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)