BAC Information

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BAC

Clone NameMSMg01-193F15
Chromosome1 (Build37)
Map Location 67,414,025 - 67,488,779
singlet/doubletdoublet
Overlap genenone
Upstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193F15.T7 (MSMg01no193_f15.b1)MSMg01-193F15.TJ (MSMg01no193_f15.g1)
ACCAG382694AG382695
length763745
length of high quality
(start - end)
320 (46 - 365)296 (77 - 372)
definitionCHROMAT_FILE: MSMg01no193_f15.b1 PHD_FILE: MSMg01no193_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:43 2005CHROMAT_FILE: MSMg01no193_f15.g1 PHD_FILE: MSMg01no193_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,488,464 - 67,488,779)(67,414,025 - 67,414,316)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTCGCTCCCGCGTACAAGGCTTGTTTACTAGTTAGGGCACAG
CGGAGGCCCGCGCCATCTTATAATGGCGATTGCTCGCGGCACACACGGCT
CTCCTCAGAGATTACTGGCGGCACACATGCGATTGCTCGCAGCACTTACC
GGCTCTCCACAGCTAGTGTTCTGTTTTATTGCTACAGATTGATGTGTCTG
GGGGAAGGTCTGCAGGCAGCCTACCAGGGTTTCTGGTAGTTGGGGTCTGT
GACCTATTTTCTGCTTTGAAGCCTTCATTGCAGAAGATTCTGAAGGCATG
CTTGACCTACACAGTTTCTCTAACTCATCAGCGAACTAGACACATGAAGA
ATTGACATTTCACCTCCCCCCCCAAGGAGATGAACAAGAATTGTACCAGG
CTTTATATAATTTATTTTATGTTATTATTATCATTTATGATTAATTTGCA
AGCAAATTCATTTCCCCAGTTCCCTGTCTTCCAGACATTTGGTCCATACC
CTCCGAGTTCCGATTGACCCCACTACACCATATTTATCCCCCTCCCCCGC
CCTCTCTTCCCTGTACTCTGGTCCTTACTACTCCCCATTCTCCCCCCTTT
CCCACTTCTTTACTTCCATCCCATCTCTTGTTTTTTCCCCCCCTTTTATT
CTTTTATCACTCCTCCCCTTATCCCCCCTATTCCCCCCCGTATTTCCCCC
CTTCCTTCTTTTG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGAACAATGTTGGAGTTTAAAA
CTTAGTGTAGGAGGCCCAGGCAAGCCACTCTGAGGTTTAAATAAGTGTTC
TATAAGTAACTGAAGACAATTACTTAGTTCTTTAGTGTTCAATGTGATAG
ATAAACCCTGATCTTAAATGTGCACTTTGTAATTGAGACTGAAAGAGAAG
GGATAACTGAAGGAGACCTGGTTTTCAACATTCTATATAGAATCTTGAAT
TTTCAGAGCTATCTTTTTGAGAACAGAAATAAGACAAGGATACTAGTACT
CCAATTTAATTCTTTTTGTTCCGACGAGCCCCCCTTAAAAAGGAAAAATA
AAAAAATCTATGATCTCATACTTTCCACTCTAAAATCTGACCAAATTACA
CAGAATTCTCTTAAAATCATTAGACCTAAAAGGGTATCATGTATTATTCA
CATAACTTACCTTCTAGAGGTTCAGATACTCTAGACTCCTGATAGCTCAA
TGAATGTTACAGTAGCCACCATCAAATTAAATGGAGAGAAACTCAAAGAA
ATTTCACTAAAGTTGGGAATGTGACAAGGTTGTCCACTCTCCTCGTGTCC
ATTCATTTTAGCTAGAATGATAAGACAATGTNAAGAGACAATGATTAGGG
GATACAGAATAGAAAAGAAATCCAGGCTTCTTTTTTTTGAGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_f15.b1 MSMg01no193_f15.b1 CHROMAT_FILE:
MSMg01no193_f15.b1 PHD_FILE: MSMg01no193_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:43 2005
         (320 letters)



>mm_chr1_67488098_67488817
          Length = 720

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactctcgctcccgcgtacaaggcttgtttactagttagggcacagcggaggccc 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaattcactctcgcacctgcgtacaaggcttgtttactagttagggcacagcggaggccc 623

                                                                       
Query: 65  gcgccatcttataatggcgattgctcgcggcacacacggctctcctcagagattactggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gcgccatcttataatggcgattgctcgcggcacacacggctctcctcagagattactggc 563

                                                                       
Query: 125 ggcacacatgcgattgctcgcagcacttaccggctctccacagctagtgttctgttttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggcacacatgcgattgctcgcagcacttaccggctctccacagctagtgttctgttttat 503

                                                                       
Query: 185 tgctacagattgatgtgtctgggggaaggtctgcaggcagcctaccagggtttctggtag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgctacagattgatgtgtctgggggaaggtctgcaggcagcctaccagggtttctggtag 443

                                                                       
Query: 245 ttggggtctgtgacctattttctgctttgaagccttcattgcagaagattctgaaggcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttggggtctgtgacctattttctgctttgaagccttcattgcagaagattctgaaggcat 383

                           
Query: 305 gcttgacctacacagt 320
           ||||||||||||||||
Sbjct: 382 gcttgacctacacagt 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no193_f15.g1 MSMg01no193_f15.g1 CHROMAT_FILE:
MSMg01no193_f15.g1 PHD_FILE: MSMg01no193_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:43 2005
         (296 letters)



>mm_chr1_67413825_67414520
          Length = 696

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaacaatgttggagtttaaaacttagtgtaggaggcccaggcaagccactctgaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaacaatgttggagtttaaaacttagtgtaggaggcccaggcaagccactctgaggt 260

                                                                       
Query: 61  ttaaataagtgttctataagtaactgaagacaattacttagttctttagtgttcaatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaataagtgttctataagtaactgaagacaattacttagttctttagtgttcaatgtg 320

                                                                       
Query: 121 atagataaaccctgatcttaaatgtgcactttgtaattgagactgaaagagaagggataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagataaaccctgatcttaaatgtgcactttgtaattgagactgaaagagaagggataa 380

                                                                       
Query: 181 ctgaaggagacctggttttcaacattctatatagaatcttgaattttcagagctatcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaaggagacctggttttcaacattctatatagaatcttgaattttcagagctatcttt 440

                                                               
Query: 241 ttgagaacagaaataagacaaggatactagtactccaatttaattctttttg 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgagaacagaaataagacaaggatactagtactccaatttaattctttttg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)