BAC Information

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BAC

Clone NameMSMg01-193I21
Chromosome1 (Build37)
Map Location 82,210,593 - 82,210,972
singlet/doubletsinglet
Overlap genenone
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193I21.T7 (MSMg01no193_i21.b1)MSMg01-193I21.TJ (MSMg01no193_i21.g1)
ACCAG382811AG382812
length1,2731,175
length of high quality
(start - end)
34 (31 - 64)387 (71 - 457)
definitionCHROMAT_FILE: MSMg01no193_i21.b1 PHD_FILE: MSMg01no193_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:03 2005CHROMAT_FILE: MSMg01no193_i21.g1 PHD_FILE: MSMg01no193_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCGGCACATTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATT
CTGTTTCTTAATACCCCCTTAAGACCCCCGGNNCNNNNCGNGGGGGAACC
GGGACCATTAAAATTCCCAAGCGNCACNCCGGGCGCGCCCACNCCCCNCA
CNNAGGCCCANAGCGAGGCCAGAAGGCTCAGGAGGGAACACGCGAACACA
CAGCCACNCACCAGGAGGGGCAGGAAGCAGCNAAAGCAAGGAANCCCAAC
CAACCCANAGGNGGCAACCCCCCCGGGAGNCAAACAACCCNNNCACAGGG
GNAACANACCAGAAANCNGGCATTTCAGAGANNNACATNANGANNCANAG
CCANAGCAAAANNACAGGNANGAAGNAGCAAGGAAAACAAGGTTTTTTTT
TGGGAGGCGAGCACAACACAAGGAACNAGAGAGAAAAGAAACCGTTTTTT
TTTTCCCCCCCCCCAAAGANNNACCCCCCCCCCCAAAAAAAGGGGGGGGG
GNNNNNNNNNNNNNNNNNNNNNNNNNCNCNNCNCNCCNNNNNNNNNCCNC
CCCCCNNNNCCNCCCCCCCCCCCCCNCCCCNNCCCCCCCCCNNCCCCCCC
CCCCCCCCCCCCCCCCCCNCCCNNCCCCCCCCCCCCCCCCCCNCCCCCCC
CCCCCCCCCCCCCCCCCCCCCNNCCCCNCCCCCCCCCCCCCCCCCCCCCC
CNCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCNCCCCNCCCCCCNCCCCCCCCCCNCCNCCCCTTCTTTT
TCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCNCCCNCCCCCCCC
CCCCCCCCCCCCNCCCCCCCCCCCNCCCCCCCNCCTCCTCCCCCCCCCCC
CCNCNNCCCCCCCCAAACNCCCCNNNNNCCCNCTCCCNNCCTCCCCNCCN
CCCCCCTCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNCCCCCT
CCCCCCTCCCCTTCCCTCCTCCTCCCCCTCCCCCCNCCCCCCNCCTCCTC
CNCCCCCCTCNTCCTCCCCCTCTCTCCTCCCCNTCTCCCCCCCTCCTCCC
TCCTTCCTTCTCCCTCCCCCCCCTTCCCCCCCCCCCCTCCCTCTCCCCCT
NTTCTCCCCTTCCTCTTCCTTCCCTTCTCCTCCTCTCTCCCCCCTCCCTT
TCCCCTCNCCCCTCCTTTCNTTCCTTCCCCCCTCCTCCCCTTTTTCTCCC
CCCCCCCTTCTCTCCTCCTCNCC
NNNTATATGACTGGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTACAGAGGGAGTCTTTCTCTACTCTG
CCTTGCAGCAAGTCAACACTTTTTTTCCCCCTCAGAGGTGAAAGAGGAAG
AGGAAGGAAGACCTTGCAACAGGAATCTCACCAAATCAATAGCTTGACAG
GCTGCAAAGGTATTTTCTTCTCAAGTTGAGGATTGCAGCAAATACTTAGT
GGTTAAGTTCTTTCTCACCTGTGACTCCTGTGGACTGAATTCATTCATTC
TTTTCACAGGCTACAGTCAGCACTTAGTTCAGTGTGTCTCGATCTCCAGA
GCTATTGCCAGTTTATTCTGGGAGATGCTTACAGAGAAAAGCATATCTCA
ATCATCTCTAAATACTTTATATGATTCATTAAGGCTCCATGAAAGAGTTT
TTTTTTTACCCCCGCATTTCTACTTAGAACTTAATGAAAAAAGGGGGGGA
NNANTGATCCCTGGTTAAACATTTGGTTAAATATCATAAAACATCAACTA
TTATAAAATGTGACAGGTACTGTAGCAGCTGGCGATATTCTGCTTGCTCT
CTTTAAATGCTCCCTTTAAAAATAGCTTCCCCAATTTAGAATTTAAAGGG
CAAACATTCTACACATTTGTTCATAAAAAGATTTTTTTATCACATATATA
GTCTAAAAAGGCAGCACTATTTCTAAGATATACATTACGTACTAATGTCT
AAATATTTTGACAGTGCAGGCAAGGCAATCAGTAAATAGGTTTGGTTTGC
ATACACTAATCTAATCACCCAGGCCAGTGTAAATTGTCAAGAATGGTTCG
GTATTTCTAAAACCAGCCTATTTTCCTACAGTCCTCCAAAAAAGTCCAAA
TTGCCTGGGATGTTTATCAAATATCTTTGAACAATTTCTCAAAAAACCTA
ATCAAAATAAGCTTTAACCCCCCCCCTCCCTGAACCCCTAAAAAAAATCC
CCCATGGGTTAACCGGGTCCTTAATTCCCCTTCCTCCCCCCCCCTCCGGA
TATGAGGGCCATAATTTTTCCACTTTTTTTCTTCTTTAAGGGAAGCGTAT
TACATTTTTCTCTCCCCACATAATACATTCGGGTTGATGCGCCGCCCATA
TATATTTCCTTCCCTTCTTTACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_i21.g1 MSMg01no193_i21.g1 CHROMAT_FILE:
MSMg01no193_i21.g1 PHD_FILE: MSMg01no193_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:03 2005
         (387 letters)



>mm_chr1_82210393_82211181
          Length = 789

 Score =  681 bits (352), Expect = 0.0
 Identities = 373/380 (98%), Gaps = 2/380 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtacagagggagtctttctctactctgccttgcagcaagtc-aacactttttttccc 59
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 580 tttgtacagagggagtctttctctactctgccttgcagcaagtcaaacacttttttcccc 521

                                                                       
Query: 60  cctcagaggtgaaagaggaagaggaaggaagaccttgcaacaggaatctcaccaaatcaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cctcagaggtgaaagaggaagaggaaggaagaccttgcaacaggaatctcaccaaatcaa 461

                                                                       
Query: 120 tagcttgacaggctgcaaaggtattttcttctcaagttgaggattgcagcaaatacttag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 460 tagcttgacaggctgcaaaggtattttcttctcaagttgaggattgcagcaaatacttaa 401

                                                                       
Query: 180 tggttaagttctttctcacctgtgactcctgtggactgaattcattcattcttttcacag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tggttaagttctttctcacctgtgactcctgtggactgaattcattcattcttttcacag 341

                                                                       
Query: 240 gctacagtcagcacttagttcagtgtgtctcgatctccagagctattgccagtttattct 299
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 340 gctacagtcagcacttagtgcagtgtgtctcgatctccagagctgttgccagtttattct 281

                                                                       
Query: 300 gggagatgcttacagagaaaa-gcatatctcaatcatctctaaatactttatatgattca 358
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gggagatgcttacagaaaaaaagcatatctcaatcatctctaaatactttatatgattca 221

                               
Query: 359 ttaaggctccatgaaagagt 378
           ||||||||||||||||||||
Sbjct: 220 ttaaggctccatgaaagagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 789
Length adjustment: 9
Effective length of query: 378
Effective length of database: 780
Effective search space:   294840
Effective search space used:   294840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)