Query= MSMg01no194_a13.b1 MSMg01no194_a13.b1 CHROMAT_FILE:
MSMg01no194_a13.b1 PHD_FILE: MSMg01no194_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:48 2005
(692 letters)
>mm_chr1_42466458_42467549
Length = 1092
Score = 1009 bits (522), Expect = 0.0
Identities = 627/696 (90%), Gaps = 56/696 (8%)
Strand = Plus / Plus
Query: 5 gaattccatgatttctcccctaatcatacaccttaacttcttcagtttacagaccaactt 64
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgatttcgcccctagtcatacaccttaacttcttcagtttacagaccaactt 264
Query: 65 gtcttcagctctgccttattcactaatatggttatatcagtgcctaacctcgtggatact 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 265 gtcttcagctctgccttattcactcatatggttatatcagtgcctaacctcgtgggtact 324
Query: 125 aacacgcagctccctgtagggtactctaaatacttcccttgagattttcttttccaatac 184
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 aacacgcagctccctgtagggtactcgaaatacttcccttgagattttcttttccaatac 384
Query: 185 aaaatatcaaacatttaattctgagtagaaaaacattatttctgttccaaagaaagagag 244
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 aaaatatcaagcatttaattctgagtagaaaaacattatttctgttccaaagaaagaaag 444
Query: 245 agagagagagagagagagagagagagagagagagagaaagaaagaaagaaagaaagaaag 304
||||||||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct: 445 agagagagagagagagagagagagagagagagagagagagagaga--ga----------- 491
Query: 305 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagcaagcaagcatt 364
||||||||| |||||||||||||||
Sbjct: 492 -----------------------------------gaaagaaagcaagcaagcaagcatt 516
Query: 365 agtgaacttcacctctgttaaatatctcagaacttaagagttgcttcttggagacacctg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agtgaacttcacctctgttaaatatctcagaacttaagagttgcttcttggagacacctg 576
Query: 425 tggtagttcaactgatatatcccccacggaatttcaatacttggtccccagtttatggca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tggtagttcaactgatatatcccccacggaatttcaatacttggtccccagtttatggca 636
Query: 485 ctatttgagaaagcttagtaagtatggcctttttggaagaggtatgtcacaggagcg--g 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 637 ctatttgagaaagcttagtaagtatggcctttttggaagaggtatgtcacaggagcgcgg 696
Query: 543 gcttcacaaggctaagactcaagtcacttcctgttcactctttctgcttctcgatcactt 602
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 697 gcttcacaaggctaagactcaagtcgcttcctgttcactctttctgcttctcgatcactt 756
Query: 603 ttagatgtaagttctcagcttcttgcttcaaccatcatgcc-----tct-gctctgccct 656
||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 757 ttagatgtaagttctcagcttcttgcttcaaccattatgcccctgctcttgctctgccct 816
Query: 657 catttgattcctctagaaccatgagccagagaagct 692
||| ||||||||||||||||||||||||||||||||
Sbjct: 817 catctgattcctctagaaccatgagccagagaagct 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_a13.g1 MSMg01no194_a13.g1 CHROMAT_FILE:
MSMg01no194_a13.g1 PHD_FILE: MSMg01no194_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:48 2005
(537 letters)
>mm_chr1_42568996_42569932
Length = 937
Score = 1023 bits (529), Expect = 0.0
Identities = 535/537 (99%)
Strand = Plus / Minus
Query: 1 acctggtgagtgaattaatattttttattctttctttgatgaattccataattgatgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 acctggtgagtgaattaatattttttattctttctttgatgaattccataattgatgagg 678
Query: 61 gttttaaatctcttaagaatgtttatagtcctgcttgcttgtggctctctccgggcaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gttttaaatctcttaagaatgtttatagtcctgcttgcttgtggctctctccgggcaaac 618
Query: 121 cctgcagcatcgagggtaaattccactccgtactctctgcattccattatccaggctaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cctgcagcatcgagggtaaattccactccgtactctctgcattccattatccaggctaca 558
Query: 181 gctctgctttgcctgcgattggttgggcttgaaccagagttcatgtctacaacatcagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gctctgctttgcctgcgattggttgggcttgaaccagagttcatgtctacaacatcagcc 498
Query: 241 tcaagacacgggggctcaaggcggcttgctggcccttgttgtggagaatatttattttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcaagacacgggggctcaaggcggcttgctggcccttgttgtggagaatatttattttgt 438
Query: 301 actgtgtagtgaagctgccaaaaatgtgtgttttgtttattgccaaagggtcttgttggc 360
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 437 actgtgtagtgaagctgccaaaaatgtgtgttttgtttattggtaaagggtcttgttggc 378
Query: 361 attagattacttagggatgtgtctcttgcaattacaagaggcattctgtttatattaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 attagattacttagggatgtgtctcttgcaattacaagaggcattctgtttatattaact 318
Query: 421 gtttatattaacattttcgactttggttactcaggagcatcgctttccatgggtgtgaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtttatattaacattttcgactttggttactcaggagcatcgctttccatgggtgtgaat 258
Query: 481 atgcaatgatgaacatgtaaaattgtctcagattaaaactggctttctaggaaaatg 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atgcaatgatgaacatgtaaaattgtctcagattaaaactggctttctaggaaaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
