BAC Information

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BAC

Clone NameMSMg01-194B01
Chromosome1 (Build37)
Map Location 82,940,095 - 82,940,375
singlet/doubletsinglet
Overlap geneA030003K21Rik
Upstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362
Downstream geneLOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194B01.T7 (MSMg01no194_b01.b1)MSMg01-194B01.TJ (MSMg01no194_b01.g1)
ACCAG383124
length700758
length of high quality
(start - end)
---283 (134 - 416)
definitionCHROMAT_FILE: MSMg01no194_b01.b1 PHD_FILE: MSMg01no194_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:50 2005CHROMAT_FILE: MSMg01no194_b01.g1 PHD_FILE: MSMg01no194_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

GAAACTAGCGCATTTTTTAAGACTTTTTTTCATANTCNCTCCCCGTTTTA
TTATCTTTTTCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCGGATGTTCCTAA
TTTGCTTTTCTTCTGAGACTTCTCACTTAAGTGGGGAGATTCCAATCAGG
TGATGGATAGAAACACATTGAAGAGGACCCGGGAAAGGCTACTTCTCAAT
TAGGTGTCCAATTCTCTGCAAATCTGGAAGATGTGGTATGCTACTGCGAA
GTGGAGTGCCTGTCCCCCATATCAGCTACTCGTCACTTGCTTGTGACCAC
AGCTTTACAAAGGGAAAGTCACTGCTAGCATGTGCGAGAGGTCATGTGAA
GTGCATGGGATGTAAATTTTGGTACATCCTTTCCGTGACCCTGTTGGGAA
AACAGCAGCTGCTCCACAAGGAAGTGACCTCAGAAAAAACCATCTTACCT
CTTCCCCCTTCCCAAGATGGTATTTAAGGGGCTCCTCCTGCAGGAGGAGC
ATCACATCTCTCTCTCCTCTCCCGAGTCTCTCTCCTCACTGCACTTGAGT
TCTCTCTACTAACACCATGGTTTGTGGTTGTGGAGGTTGTGGCGGCTGTG
CCGACTGTAGCAGCTGCACCACCTGCAGATACTACCGTTGTTGTGGTGTT
TGCCGCGGCTGCCGCGATTGTGGCCTGCTGTGGATGTGCATGCGCCGCCT
GTGCTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_b01.g1 MSMg01no194_b01.g1 CHROMAT_FILE:
MSMg01no194_b01.g1 PHD_FILE: MSMg01no194_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:50 2005
         (283 letters)



>mm_chr1_82939893_82940575
          Length = 683

 Score =  520 bits (269), Expect = e-152
 Identities = 278/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   ttcggatgttcctaatttgcttttcttctgagacttctcacttaagtggggagattccaa 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttcggatgttcctaatttgcttttcttctgagacttctcacttaagtggggagattccaa 424

                                                                       
Query: 63  tcaggtgatggatagaaacacattgaagaggacccgggaaaggctacttctcaattaggt 122
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 423 tcaggtgatggatagaaacacattgaagaggaccagggaaaggctacttctcaattaggt 364

                                                                       
Query: 123 gtccaattctctgcaaatctggaagatgtggtatgctactgcgaagtggagtgcctgtcc 182
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 363 gtccaattctctgcaaatctggaagatgtggtatgctactgcgaagttgagtgcctgtcc 304

                                                                       
Query: 183 cccatatcagctactcgtcacttgcttgtgaccacagctttacaaagggaaagtcactgc 242
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 303 cccatatcagctactcgtcacttgcttgtgaccgcagctttacaaagggaaagtcactgc 244

                                                    
Query: 243 tagcatgtgcgagaggtcatgtgaagtgcatgggatgtaaa 283
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tagcatgtgcgagaggtcatgtgaagtgcatgggatgtaaa 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)