BAC Information

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BAC

Clone NameMSMg01-194B08
Chromosome1 (Build37)
Map Location 6,383,444 - 6,383,829
singlet/doubletsinglet
Overlap geneEG620393
Upstream geneOprk1, Npbwr1, 4732440D04Rik, Rb1cc1, LOC100039302, LOC664946
Downstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194B08.T7 (MSMg01no194_b08.b1)MSMg01-194B08.TJ (MSMg01no194_b08.g1)
ACCAG383135AG383136
length746723
length of high quality
(start - end)
390 (45 - 434)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no194_b08.b1 PHD_FILE: MSMg01no194_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:52 2005CHROMAT_FILE: MSMg01no194_b08.g1 PHD_FILE: MSMg01no194_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATATTTTTCCCCTTATTGGTTTTTAACGTATTTTACGTTAAACATA
TGAAGTTCCTAGATTAATATAATACTTGGGCTTGTTCCTCTCCTAACATT
GTATGATTATTTAAAACATGGGCCTTGGGATGTAGTTTAAAGGTAGATCA
TGTACTTGTGTTTGCATCAGGTTCTGATATTAGATCCTGCTAAAAAAAAT
CAAGATGAAAACAGTTTTGAAGTTCAGTGGTTTCTTTTGTAATATTCTGT
GTAAATGCCTGTTTCAGATTACTATATATCCAAGATTTCATTTACTTTTA
TCTTATGTGTATGTGTTTTTGCCCATGTGTGTGCCTGGATCTGGAGTTGT
AAGCTGTCATGTGGTTCGAACTAAATTTCCTGGAAGAGCATCCAGTATGT
GTCGCTTTTGAGTCAGCCCTGTTTCAGATTGTTTATCAAGTGTTTATAAT
CCCAAGTTTAATACGTTTTTATAAGCATTTCTCCTGTGTCACATGCTTTC
TGTCACTAGGGAAGATTTATCTTTCCCTTTCTGTATAAAACTCCCTTCCT
CTGTGTTTTGATTACCAATCCTGCTTTTCTCATCCTTATTTCCATACACA
GATATAATTTACGCTCGTTCTGTTCTCTTTCCTCCCCTCTTTTTAACCCT
CCCTCCCTTTACCTTCCTTTTATTCCCCCCTTTCTTATCTCTCCTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCT
GAGAAGCACATGAAAAAATGTTCATCATCCTTAATTATCAGGGAAATGCA
AATCAACATATGGGCACAGGGGAAAAATTCCTGGACAGGACACCAATGCC
TTGTGCTGTAAGATCAAGAATTGACAAATAGGACCTCATAAAATTGCAAA
GCTTCTATAAGGCAAAGGACACTGTCACTAAGACAAAAAGGCAACCAACA
GATTGGGAAAAGATCTTTACCAATCCAATATGATATAGATGGCTAATATC
CAATATATACAAAGAACTCTTTAAGCCCCCCCCCCCTCCATAGAACAAAA
TAACCATATTAAAAATTCGGGTACCGAGCTAAACAAAGAATTTTCAACTG
AGGACTACTGAATGGATAAGAAGCACCTGAAAAAAATATTCAACATCCTC
AGTCATCAGGGAAATGGAAATCAAAACAACTCTGAGATTCCACCTCACAT
CAGTCAGAATGGCTAAGATAAAAAACTCAGGTGACAGCATATGCTGTCAA
GGATGTGGAGGAAGAGGAACACTCCTCCACTGCTGGTGGAATTGCAAGCT
GGTACAACCACTCTGGAAATCAGTCTGTCGGTTCCTCAGAATATTGGACA
TAGTACTACCATAAGATCCAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_b08.b1 MSMg01no194_b08.b1 CHROMAT_FILE:
MSMg01no194_b08.b1 PHD_FILE: MSMg01no194_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:52 2005
         (390 letters)



>mm_chr1_6383240_6384029
          Length = 790

 Score =  685 bits (354), Expect = 0.0
 Identities = 378/386 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatttttccccttattggtttttaacgtattttacgttaaacatatgaagttc 64
           ||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 205 gaattcatatttttccctttattggtttttaacgtattttacattaaacgtatgaagttc 264

                                                                       
Query: 65  ctagattaatataatacttgggcttgttcctctcctaacattgtatgattatttaaaaca 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctagattaatataataattgggcttgttcctctcctaacattgtatgattatttaaaaca 324

                                                                       
Query: 125 tgggccttgggatgtagtttaaaggtagatcatgtacttgtgtttgcatcaggttctgat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgggccttgggatgtagtttaaaggtagatcatgtacttgtgtttgcatcaggttctgat 384

                                                                       
Query: 185 attagatcctgctaaaaaaaatcaagatgaaaacagttttgaagttcagtggtttctttt 244
           ||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||
Sbjct: 385 attagatcctgctaaaaaaaatcaagatggaaacagttttgaagtttggtggtttctttt 444

                                                                       
Query: 245 gtaatattctgtgtaaatgcctgtttcagattactatatatccaagatttcatttacttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtaatattctgtgtaaatgcctgtttcagattactatatatccaagatttcatttacttt 504

                                                                       
Query: 305 tatcttatgtgtatgtgtttttgcccatgtgtgtgcctggatctggagttgtaagctgtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatcttatgtgtatgtgtttttgcccatgtgtgtgcctggatctggagttgtaagctgtc 564

                                     
Query: 365 atgtggttcgaactaaatttcctgga 390
           |||||||| |||||||||||||||||
Sbjct: 565 atgtggtttgaactaaatttcctgga 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)