Query= MSMg01no194_b11.b1 MSMg01no194_b11.b1 CHROMAT_FILE:
MSMg01no194_b11.b1 PHD_FILE: MSMg01no194_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:52 2005
(676 letters)
>mm_chr1_14738227_14739300
Length = 1074
Score = 1102 bits (570), Expect = 0.0
Identities = 638/678 (94%), Gaps = 33/678 (4%)
Strand = Plus / Plus
Query: 5 gaattcaaaggacatcaccgcaatagtgttcatgtgagtcagtgggttgaaagtctgtgt 64
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaggacatgatcgcaatagtgttcatgtgagtcagtgggttgaaagtctgtgt 264
Query: 65 gctt-----tgaaagtcagggcaccctgagaataaaattatgagaaaataacccatttta 119
|||| || |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 gcttgtttgtg-------gggcaccctgagaataaaattacgagaaaataacccatttta 317
Query: 120 aatattgatctttgaaagtctgctccatttctttatttatccaaattcttactattgtca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aatattgatctttgaaagtctgctccatttctttatttatccaaattcttactattgtca 377
Query: 180 gtattcaatgtaacttcttttgtgggtctgtttgctcttttgagacacttgttacaagag 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 378 gtattcaatgtaacttcttttgtgggtctgtttgctcctttgagacacttgttacaagag 437
Query: 240 caatcccaccactgaacccactcactcccctgtgaagtttt-gttccttatttgctttat 298
||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct: 438 caatcccaccactgaacccactcactcccctgtga-gtttttgttc-----------tat 485
Query: 299 gtaagctaatgtgcttacatatgtaagctctggaaagtggtcagcttataatctttcttc 358
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 486 gtaagctaatgtgct-aca-------gctctggaaagtggtcagcttataatctttcttc 537
Query: 359 tccagcctccgagagagtgggatggcaggctgtagcacccacctggctttgggtctattc 418
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tccagcctccgagagagtgagatggcaggctgtagcacccacctggctttgggtctattc 597
Query: 419 taaagactgaactattaaatgtcctctcccctaaggcttgcccctgcctccggatttcct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 taaagactgaactattaaatgtcctctcccctaaggcttgcccctgcctccggatttcct 657
Query: 479 ctccttgtgagcttttccagtgttactgactacataagcattgcagttgctggaccatgc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ctccttgtgagcttttccagtgttactgactacataagcattgcagttgctggaccatgc 717
Query: 539 tccagtgcttgctccggaaccactcttttggcccagttcagatgaagaaactgagattag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tccagtgcttgctccggaaccactcttttggcccagttcagatgaagaaactgagattag 777
Query: 599 aaggaataaatttacatttgctgcatgtagtgcaataaactacttatattctaatatggg 658
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 778 aaggaataaatttacatttgctgcatgtagtgcaataaaccacttaaattctaatatggg 837
Query: 659 tctgaggaatttctgctt 676
||||||||||||||||||
Sbjct: 838 tctgaggaatttctgctt 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1074
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1064
Effective search space: 708624
Effective search space used: 708624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_b11.g1 MSMg01no194_b11.g1 CHROMAT_FILE:
MSMg01no194_b11.g1 PHD_FILE: MSMg01no194_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:52 2005
(339 letters)
>mm_chr1_14776821_14777559
Length = 739
Score = 625 bits (323), Expect = 0.0
Identities = 335/339 (98%)
Strand = Plus / Minus
Query: 1 ttaatgttttacctctaaaattcaatatttcaatgctatgttcacatttaaccagcatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ttaatgttttacctctaaaattcaatatttcaatgctatgttcacatttaaccagcatca 480
Query: 61 atactttggctatatttcactatgcactttgcaaagccaattcttgttagagtacttgga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 479 atactttggctatatttcactatgcactttgcaaagccaattcttgttagagtactggga 420
Query: 121 aggagttgagtagtcatttatttcctaggttacttgtaaatacttccaacaaacatcaaa 180
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 419 aggagttgagcagtcatttatttcctaggatacttgtaaatacttccaacaaacatcaaa 360
Query: 181 gttaagcatttctctttcttgcatcttcatcatccagaaaattctcccgaacatagaaga 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 359 gttaagcatttctctttcttgcatcttcatcatccagaaaattcttccgaacatagaaga 300
Query: 241 ttctttactgttgcatgaatagacaagttaaatgcaaagaagaactgaggtccttgacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttctttactgttgcatgaatagacaagttaaatgcaaagaagaactgaggtccttgacag 240
Query: 301 aatggtaaggtgggtaaaccgaacaggatggatctggaa 339
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aatggtaaggtgggtaaaccgaacaggatggatctggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
