Query= MSMg01no194_c02.b1 MSMg01no194_c02.b1 CHROMAT_FILE:
MSMg01no194_c02.b1 PHD_FILE: MSMg01no194_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:55 2005
(485 letters)
>mm_chr1_80387975_80388859
Length = 885
Score = 911 bits (471), Expect = 0.0
Identities = 477/479 (99%)
Strand = Plus / Plus
Query: 7 gaattctatgaagagtacgagccaagccagacaaataaacattcaattattaatgtttag 66
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctatgaagagtaggagccaagccagacaaataaacattcaattattaatgtttag 266
Query: 67 cgagactgccaatacctatgcatgtaattgatagtgtgtcaatgtttgagatatgtaaaa 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cgagactgccaatacctatgcatgtaattgatagtgtgtcaatgtttgagatatgtaaaa 326
Query: 127 tgattagtggtagtaagattgggtcatgctattagttaactttatagtccctccttcaat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgattagtggtagtaagattgggtcatgctattagttaactttatagtccctccttcaat 386
Query: 187 gtaaaattattgagcaattgttttgcaggtggaacaaataggacttttttgactggttgg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtaaaattattgagcaattgttttgcaggtggaacaaataggacttttttgactggttgg 446
Query: 247 atgtgggtgtaacagataaaaagatgaggatgccttctgtgctttgggtcacttgaaggg 306
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 447 atgtgggtgtaacagataaaaagatgaggatgccttctatgctttgggtcacttgaaggg 506
Query: 307 tggagtttctgtcacctgaggcaggggtgtgtatgggggtctgtgatggggcaggtttgt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tggagtttctgtcacctgaggcaggggtgtgtatgggggtctgtgatggggcaggtttgt 566
Query: 367 gagaaataatctcaaggcagtctgctctagttagacaattgggataccttagtgaacaaa 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gagaaataatctcaaggcagtctgctctagttagacaattgggataccttagtgaacaaa 626
Query: 427 atcaagaaaggtccaaggccctggcagtgtgttcccagagaggctgaggatggaaacac 485
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atcaagaaaggtccaaggccctggcagtgtgttcccagagaggctgaggatggaaacac 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_c02.g1 MSMg01no194_c02.g1 CHROMAT_FILE:
MSMg01no194_c02.g1 PHD_FILE: MSMg01no194_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:55 2005
(656 letters)
>mm_chr1_80488776_80489831
Length = 1056
Score = 1208 bits (625), Expect = 0.0
Identities = 650/663 (98%), Gaps = 8/663 (1%)
Strand = Plus / Minus
Query: 1 tctattgaaaagaccagcacatgcacat--------acatgtatacagactactaacaag 52
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 891 tctattgaaaagaccaacacatgcacatacatgtccacatgtatacagactactaacaag 832
Query: 53 acagttgtgaccatagagccagaaaaattattttctgttttaatgatgctccattctata 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 acagttgtgaccatagagccagaaaaattattttctgttttaatgatgctccattctata 772
Query: 113 aacaggattattcataacatccacctccataccaagagagcaagaactcacacacaacac 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 aacaggattattcataacatccacctccataccaagagagcaagaactcacacacaacac 712
Query: 173 atgaactgctcaaacctagtcacattgttcactgtggactatgaactaaacacattggag 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 atgaactgctcaaacctagtcacattgttcactgtggactatgaactaaacacattggag 652
Query: 233 tacataagttgacaccatatgggcctcctcccacccagtccactccgattaaaatcagaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tacataagttgacaccatatgggcctcctcccacccagtccactccgattaaaatcagaa 592
Query: 293 ctcagccaggatgttttgtaacactcctaaggaccactcctaaggactttacgagctaca 352
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ctcagccaggatgctgtgtaacactcctaaggaccactcctaaggactttacgagctaca 532
Query: 353 tagaatctactttaactcaacactgatgtctttacttgtgtccttttgtagtgcactggg 412
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 531 tagaatctactttaactcaacactgatgtctttacttgtgtccttttgtggtgcactggg 472
Query: 413 agacttggaaaagaagagaactggagaagaaaataaagagcagaaccaagaatagagtgg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 agacttggaaaagaagagaactggagaagaaaataaagagcagaaccaagaatagagtgg 412
Query: 473 agtgcctagccagtcttggacaacctatggttctaaatagaaagaaaacatataagttca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 agtgcctagccagtcttggacaacctatggttctaaatagaaagaaaacatataagttca 352
Query: 533 tttcacttaagccagtattgttcctgtgtctttattaacttctttgtgcaacttccaacc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tttcacttaagccagtattgttcctgtgtctttattaacttctttgtgcaacttccaacc 292
Query: 593 aatagacctttctggactcccctgaacacttgaggtccctttctgatcaccagtggcact 652
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 291 aatagacctttctggactcccctgaacacctgaggtccctttctgatcaccagtggcact 232
Query: 653 ttg 655
|||
Sbjct: 231 ttg 229
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
