BAC Information

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BAC

Clone NameMSMg01-194D14
Chromosome1 (Build37)
Map Location 182,044,334 - 182,178,021
singlet/doubletdoublet
Overlap geneCdc42bpa, Cabc1, Psen2
Upstream geneSmyd3, LOC666354, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190
Downstream geneEG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194D14.T7 (MSMg01no194_d14.b1)MSMg01-194D14.TJ (MSMg01no194_d14.g1)
ACCAG383228AG383229
length708714
length of high quality
(start - end)
663 (46 - 708)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no194_d14.b1 PHD_FILE: MSMg01no194_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:02 2005CHROMAT_FILE: MSMg01no194_d14.g1 PHD_FILE: MSMg01no194_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(182,177,363 - 182,178,021)(182,044,334 - 182,044,621)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGTTGCTGCAAGGGATACTGAAGAGACCTTGGGTCTAGTGGGT
GTGTGTTTAAGATATGACAGACAGCCAGTTCTCAAAGAGGAAGGGGACCT
TACAGTCTTGCAGACCCCTGCTTGGCAAGAATTCCCCCATATGTCAGGGC
AAGGTGACCTTTGAAGCTATGTCCCCTTAAGCTGAGTTCTCTTGTAGAGA
CTCTTGGTTCCAAAGCTCTAGGGCACAGAACACCTTCTGAGCACAGGGCT
TAGCTCAGCTTCCAGAATGCCAAGTATGAGGGCAGTGGACCCAGCATCTA
GGCCATGCTCTGCTGTGTGTGGCCTCCATAAGAGGACATTTCTCTTCTGC
CCTCCTAGGAGATACCTAGGCTGAATTACACTCCCTTCCCCTTGGCCAGA
TGCTCAGACCCTTTCCCGGGATGGCCTACCCTAGTAGGTCCCCTGATCTC
ACCATCATATTGAGACAACATGGTGTTGTGTACCCATCCTGTTCATAATA
CTTGAATAGTTACATCTTTCCAGAATGTTCTGTCTCTGTCTGTCACAGCT
CATATACCTTTTTGGCCCATGCCCTGTCCTTCTCAGCCCTCAAGACCCAA
GAGACGGAGCGCCTGGTCCTCTCCACCTCGCTCTTGTGCCTGTGGTATTC
TGCAGCTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATACGTTAGCAACCACACATGTG
CACACCCTTGAGAGTTCATACACACACGCACACACACTCATGCGTATAGA
CACGTGCATAGACTGGCTGAGATATTAGGTATTAGTTAATATACATTATA
TTAAGAATTTTAAATTACAGAAATGACTGCTTTGCCATGAATTTGACTGT
CTTTTCAGTGTTAAAATATACTTCATGAGTAACTTTTGAGTTGGGATAAA
AGTATTTTGTGATGTATTTATAATGTTCTCACATGTCATATGAGGTAGAC
ACTTCAACAGTGTTTTTTTTCCCCCCCCCCCCACAAACTTGAAAAGGGAG
AAGTTGATTTGGGGGCAGAGTCTTATTGAATAGCCCTTGGTGTTCTTGAT
TTAAGAATCCTCTTGCCCACTTCCCCAGAGTGCTAGGATTGCATTTATTA
GCACTGTCTATGGACCTACAGTATACAAAATCTTATGGGTATAGGAAAAA
CAATCAGGGAAACAATATAAAATAATTAACTCAATATTAATTATTTTACT
AATGAATAATTTTTGGGTGTTTGTTGTCTTTTTCCAGGTTGGCTAATGCT
TACATTGTTTGTCCTTTTTGATTTACCAGATTTACTAGTATTTTTTTTGA
GAACTTTTGTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_d14.b1 MSMg01no194_d14.b1 CHROMAT_FILE:
MSMg01no194_d14.b1 PHD_FILE: MSMg01no194_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:02 2005
         (663 letters)



>mm_chr1_182177159_182178221
          Length = 1063

 Score = 1193 bits (617), Expect = 0.0
 Identities = 649/661 (98%), Gaps = 4/661 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgttgctgc--aagggatactgaagagaccttgggtctagtgggtgtgtgtt 62
           ||||||||||||||  |  ||| ||||| ||||||| || ||||||||||||||||||||
Sbjct: 863 gaattcactgttgc--cagaagagatacggaagagatctcgggtctagtgggtgtgtgtt 806

                                                                       
Query: 63  taagatatgacagacagccagttctcaaagaggaaggggaccttacagtcttgcagaccc 122
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 805 taagatatgacagacagccagttctcaaagaggaaggggaccttatagtcttgcagaccc 746

                                                                       
Query: 123 ctgcttggcaagaattcccccatatgtcagggcaaggtgacctttgaagctatgtcccct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctgcttggcaagaattcccccatatgtcagggcaaggtgacctttgaagctatgtcccct 686

                                                                       
Query: 183 taagctgagttctcttgtagagactcttggttccaaagctctagggcacagaacaccttc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taagctgagttctcttgtagagactcttggttccaaagctctagggcacagaacaccttc 626

                                                                       
Query: 243 tgagcacagggcttagctcagcttccagaatgccaagtatgagggcagtggacccagcat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgagcacagggcttagctcagcttccagaatgccaagtatgagggcagtggacccagcat 566

                                                                       
Query: 303 ctaggccatgctctgctgtgtgtggcctccataagaggacatttctcttctgccctccta 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctaggccatgctctgctgtgtgtggcctccataagaggacatttctcttctgccctccta 506

                                                                       
Query: 363 ggagatacctaggctgaattacactcccttccccttggccagatgctcagaccctttccc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggagatacctaggctgaattacactcccttccccttggccagatgctcagaccctttccc 446

                                                                       
Query: 423 gggatggcctaccctagtaggtcccctgatctcaccatcatattgagacaacatggtgtt 482
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggatggcctaccctagcaggtcccctgatctcaccatcatattgagacaacatggtgtt 386

                                                                       
Query: 483 gtgtacccatcctgttcataatacttgaatagttacatctttccagaatgttctgtctct 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtacccatcctgttcataatacttgaatagttacatctttccagaatgttctgtctct 326

                                                                       
Query: 543 gtctgtcacagctcatatacctttttggcccatgccctgtccttctcagccctcaagacc 602
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 gtctgtcacagctcatatacctttctggcccatgccctgtccttctcagccctcaagacc 266

                                                                       
Query: 603 caagagacggagcgcctggtcctctccacctcgctcttgtgcctgtggtattctgcagct 662
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 caagagacggagcgcctggtcctctccacctccctcttgtgcctgtggtattctgcagct 206

            
Query: 663 g 663
           |
Sbjct: 205 g 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no194_d14.g1 MSMg01no194_d14.g1 CHROMAT_FILE:
MSMg01no194_d14.g1 PHD_FILE: MSMg01no194_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:02 2005
         (287 letters)



>mm_chr1_182044134_182044822
          Length = 689

 Score =  514 bits (266), Expect = e-150
 Identities = 282/288 (97%), Gaps = 2/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatacgttagcaaccacacatgtgcacacccttgagagttcatacacacacgcacacaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tatacgttagcaaccacacatgtgcacacccttgagagttcatacacacatgcacacaca 260

                                                                       
Query: 61  ctc--atgcgtatagacacgtgcatagactggctgagatattaggtattagttaatatac 118
           |||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaaatgcgtatatacacgtgcatagactggctgagatattaggtattagttaatatac 320

                                                                       
Query: 119 attatattaagaattttaaattacagaaatgactgctttgccatgaatttgactgtcttt 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 attatattaagaattttaaattacagaaatgactgctttgccatgaatttgactgttttt 380

                                                                       
Query: 179 tcagtgttaaaatatacttcatgagtaacttttgagttgggataaaagtattttgtgatg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagtgttaaaatatacttcatgagtaacttttgagttgggataaaagtattttgtgatg 440

                                                           
Query: 239 tatttataatgttctcacatgtcatatgaggtagacacttcaacagtg 286
           |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 tatttataatgttctcacatatcatatgaggtagacacttcaacagtg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 689
Length adjustment: 9
Effective length of query: 278
Effective length of database: 680
Effective search space:   189040
Effective search space used:   189040
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)