Query= MSMg01no194_i22.b1 MSMg01no194_i22.b1 CHROMAT_FILE:
MSMg01no194_i22.b1 PHD_FILE: MSMg01no194_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:27 2005
(557 letters)
>mm_chr1_71589557_71590513
Length = 957
Score = 1042 bits (539), Expect = 0.0
Identities = 548/551 (99%)
Strand = Plus / Plus
Query: 7 gaattctatcatgatttctttctaagggcacaaaacataacagaatatataatcaacttg 66
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctatcatgatttgtttctaagggcacaaaacataacagaatatataatcaacttg 266
Query: 67 gcattagaaagtttcctattaacaatagaaatgtatgagaaagtttctttataatggcaa 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gcattagaaagtttcctattaacaatagaaatgtatgagaaagtttctttataatggcaa 326
Query: 127 gctagacaggtaacaataggccttaatattttacctaggccttagcagtttaagtgttct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gctagacaggtaacaataggccttaatattttacctaggccttagcagtttaagtgttct 386
Query: 187 ggatttggtctaatgatgcttgtgttatgttaatttgggtccccaaaattgcacaagaat 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggatttggtctaatgatgcttgtgttatgttaatttgggtccccaaaattgcacaagaat 446
Query: 247 cctcatgtctgcatataaggcaccgagggaaccctgtccacagttggctttgattgttaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cctcatgtctgcatataaggcaccgagggaaccctgtccacagttggctttgattgttaa 506
Query: 307 ataaagttgccagtggccagtggctgggcagaaaggcagagagtcaagacagttaggatt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ataaagttgccagtggccagtggctgggcagaaaggcagagagtcaagacagttaggatt 566
Query: 367 cctgaccaacacacccaggaagaaggagatccgtcatgccaggaggaaaacccagatgct 426
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cctgaccaagagacccaggaagaaggagatccgtcatgccaggaggaaaacccagatgct 626
Query: 427 atgcctgagaaggtgtgtgacagagagcatagctgccatgtaggagccagggaatagcgg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atgcctgagaaggtgtgtgacagagagcatagctgccatgtaggagccagggaatagcgg 686
Query: 487 ccacaagagggctgccggaccaggtccagggcagcaaagatgaaatatagattttagtaa 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ccacaagagggctgccggaccaggtccagggcagcaaagatgaaatatagattttagtaa 746
Query: 547 gtaacaacctg 557
|||||||||||
Sbjct: 747 gtaacaacctg 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_i22.g1 MSMg01no194_i22.g1 CHROMAT_FILE:
MSMg01no194_i22.g1 PHD_FILE: MSMg01no194_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:27 2005
(661 letters)
>mm_chr1_71717676_71718737
Length = 1062
Score = 1156 bits (598), Expect = 0.0
Identities = 646/662 (97%), Gaps = 1/662 (0%)
Strand = Plus / Minus
Query: 1 actatggagaccaggttagccatgaactcacagagaacagcctgcctctatctcttgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 actatggagaccaggttagccatgaactcacagagaacagcctgcctctatctcttgaat 901
Query: 61 aatactgtcattaaaggtgtgcaccaccatgctcagctctcctgaatcttttttttttaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 900 aatactgtcattaaaggtgtgcaccaccatgctcagctctcctgaatcttttatttttaa 841
Query: 121 ttgtgtaaattttgagcccaaggaataaaataatctcattcagtacagttggatgacaga 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 ttgtgtaaagtttgagcccaaggaataaaataatctcattcagtacagttggatgacaga 781
Query: 181 tatacaaatggaggaacaaagatttagaaataatcaaa-aaacactgacaaatcccagca 239
|||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 780 tatacagatggaggaactaagatttagaaataatcaaataaacactgacaaatcccagca 721
Query: 240 gagcatggaaccatagtgccaattatataggaatgtcaactgatgaactgatatcatcta 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gagcatggaaccagagtgccaattatataggaatgtcaactgatgaactgatatcatcta 661
Query: 300 acctgaaccacagagccacttaggatctctgcagtgtcctaatggtgtaggtagaccaga 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 acccgaaccacagagccacttaggatctctgcagtgtcctaatggtgtaggtagaccaga 601
Query: 360 tggagtttcatccagctttgaacaaagcaagtcctttccttaaaagggacttttactata 419
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 600 tggagtttcatccagctttgaccaaagcaagtcctttccttaaaagggacttttactaca 541
Query: 420 attataaggcaaagaaggcgattaatatgcaaagtgcttcctgccatgtcttcctgaacc 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 540 attataaggcaaagaaggcgattaatatgcaaagtgcttcctgccatgtgttcctgaacc 481
Query: 480 aggtcacacatcctcagcatatggtggtcattatgcccagagatgttcccaaatgttggg 539
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 480 aggtcacacatcctcagcatatggtggtcattatgcccagaaatgttcccaaaggttggg 421
Query: 540 ttaattttcagcccccctaacatcttcctcttagattaacaaggtaacttagactgaact 599
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 420 ttaattttcagcccccctaacatcttcctcttagattaacacggtaacttagactgaact 361
Query: 600 gttgcaactttggggccgctaacaaatgagaataaagtgagaatcacacaagttatatac 659
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 360 gttgcaactttggggccactaacaaatgagaataaagtgagaagaacacaagttatatac 301
Query: 660 aa 661
||
Sbjct: 300 aa 299
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1062
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1052
Effective search space: 684852
Effective search space used: 684852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
