CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCCACCCTGCCAGCACTGGGGTGGGAGGAGGGGAAAACAGTGTC
TGCCTACTTTGGCAACACAGAGAGCATTTAAAAAAGCCATTTAAACTAAG
GCAGCATTTTTAACAATTCTCTGACTCCCTCCTATCTTCAGAATTCTCTA
AAATGTTCAAGGGGCTAATGTCTGTCCTCTTGTGACCCCAGAAGAGAGAA
CAAAATGACTATGACAAGTGTCTGCTACTTTGTGGTTGTCGGTACTGTCC
CTCTTGTCAGACCTTTATTTGATGCAGATGTTTAGCATAATGTAGGCCTG
GTGGGTTGCCTTAGTGACCGGGCCCTGCACAGCTCTTTCTAGTTTGCCAG
TCGTGCTGTGTGTTTTGCATAACTCCTTGAACCTGTCTTGCTGCCCAGAA
CACCCTGCTTTGGCCATGCTTGTTCTCATGCCTCAGCTCCCTGACTCTCA
CCTAAGCATGCATGAACTTTTTGTCCGCTTCCATATTAATATGATAGCCG
AGGGAAGCTAAGAGCCCTCAGCTCTTCTGGCTAAGCCTACTCTACCTGAC
CATACTGTTTGCTCTTGTGACTACTGGAGTTCTGCCTTGTGTCTATGCCA
GTCTTTGGCCTCTCCCTTGATGTAGGAAACATTCCTCTCTTGATCTGAGG
CTCAACCTT

AAAAAAAAAAAAAAANNNNANAGAAACAGCCGGGGCNCCGGGAGAGNANG
GACGAAGAAGCGGGTAGGCCGGCGGGGGNCGTTTCCGGACNGGAGGNGAN
NNAGAGAAGGTACGAAAAAGAGGGGNNNNAGGGAGGNNGNNNNNNNNNAG
GGANNNNNGAAGGTTTAAACAAAAGAAAAGAGGGAGGGNNAGNGNGAGNG
GAGAGANGAAGNNGGANNNAGGAAGNANGGNNNAAGNAGNAGNGGAAGAA
AGGNNNNGGNGAGGNNNNNNNAGGAGAGNNGAGNNNGGGNNNNGAGGAAA
GGAANNGTTGTATTTGNNAAGATGAAATTTAAAAANAAAAGGAAAAAAAG
GAAAANGGGGAANAGAANGGNNNAAGAAGGTATGGGTGGGGTTGGAGGGA
GGNAGAGGNAAGGANAGNAAAAGTGATTTGTTGTTTTCCCCCCCCCCCCC
CCCCAGAGAAANAGNGGGAAGGAGAAGGGGGGGGGNNNNNNNAAAAAAAA
AAAAAAAAAAAAAGGGGNNNNCGGGGNNGGGGNGNNNNNNNANNANNNNN
ANANGNNGNGNGNNNANNAAAAAAACACAAAGAGGAGAAAAGGGGAGGAC
GAGGAGAAAGAGACGGAGAAANGGAGGAGGAGAGGGGGGGAGGAAGAGGG
GGAAAGGGGAAGGAGGGAGAAGAAAAAGAGAGAGAGAAGGAGAAAAGAGG
CAGAAGGGGCGGGGGAGGGGGAGAGAGGAAGGGCGGGGAGAAAAAGGGGG
TTTTATTTGTGGGAGAGGAAGGGAAGGAGAGAAAGAAAAGAGAGGAAGGG
AATGGAAGGGAGGT

Query= MSMg01no194_j16.b1 MSMg01no194_j16.b1 CHROMAT_FILE:
MSMg01no194_j16.b1 PHD_FILE: MSMg01no194_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:31 2005
         (584 letters)



>mm_chr1_188977289_188978277
          Length = 989

 Score = 1077 bits (557), Expect = 0.0
 Identities = 576/585 (98%), Gaps = 5/585 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccaccctgccagcactggggtgggaggaggggaaaacagtgtctgcctactt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gaattcttccaccctgtcagcactggggtgggaggaggggaaaacagtgtctgcctactt 730

                                                                       
Query: 65  tggcaacacagagagcatttaaaaaagccatttaaactaaggcagcatttttaacaattc 124
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tggcaacacagagagtattaaaaaaagccatttaaactaaggcagcatttttaacaattc 670

                                                                       
Query: 125 tctgactccctcctatcttcagaattctctaaaatgttcaaggggctaatgtctgtcctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tctgactccctcctatcttcagaattctctaaaatgttcaaggggctaatgtctgtcctc 610

                                                                       
Query: 185 ttgtgaccccagaagagagaacaaaatgactatgacaagtgtctgctactttgtggttgt 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttgtgaccccagaagatagaacaaaatgactatgacaagtgtctgctactttgtggttgt 550

                                                                       
Query: 245 cggtactgtccctcttgtcagacctttatttgatgcagatgtttagcataatgtaggcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cggtactgtccctcttgtcagacctttatttgatgcagatgtttagcataatgtaggcct 490

                                                                       
Query: 305 ggtgggttgccttagtgaccgggccctgcacagctctttctagtttgccagtcgtgctgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggtgggttgccttagtgaccgggccctgcacagctctttctagtttgccagtcgtgctgt 430

                                                                       
Query: 365 gtgttttgcataactccttgaacctgtcttgctgcccagaacaccctgctttggccatgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtgttttgcataactccttgaacctgtcttgctgcccagaacaccctgctttggccatgc 370

                                                                       
Query: 425 ttgttctcatgcctcagctccctgactctcacctaagcatgcatgaactttttgtccgct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttgttctcatgcctcagctccctgactctcacctaagcatgcatgaactttttgtccgct 310

                                                                       
Query: 485 tccatattaatatgatagccgagggaagct-----aagagccctcagctcttctggctaa 539
           ||||||||||||||||||||||||||||||     |||||||||||||||||||||||||
Sbjct: 309 tccatattaatatgatagccgagggaagctggctgaagagccctcagctcttctggctaa 250

                                                        
Query: 540 gcctactctacctgaccatactgtttgctcttgtgactactggag 584
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gcctactctacctgaccatactgtttgctcttgtgactactggag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 989
Length adjustment: 10
Effective length of query: 574
Effective length of database: 979
Effective search space:   561946
Effective search space used:   561946
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)